Index _ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Z _ __concretePlotViewer (pyCGM2.Report.plotFilters.PlottingFilter attribute) __init__() (pyCGM2.Anomaly.anomalyCorrectionProcedures.AnomalyCorrectionProcedure method) (pyCGM2.Anomaly.anomalyCorrectionProcedures.MarkerAnomalyCorrectionProcedure method) (pyCGM2.Anomaly.anomalyDetectionProcedures.AnomalyDetectionProcedure method) (pyCGM2.Anomaly.anomalyDetectionProcedures.AnthropoDataAnomalyProcedure method) (pyCGM2.Anomaly.anomalyDetectionProcedures.ForcePlateAnomalyProcedure method) (pyCGM2.Anomaly.anomalyDetectionProcedures.GaitEventAnomalyProcedure method) (pyCGM2.Anomaly.anomalyDetectionProcedures.MarkerAnomalyDetectionRollingProcedure method) (pyCGM2.Anomaly.anomalyFilters.AnomalyCorrectionFilter method) (pyCGM2.Anomaly.anomalyFilters.AnomalyDetectionFilter method) (pyCGM2.EMG.coactivationProcedures.CoActivationProcedure method) (pyCGM2.EMG.coactivationProcedures.FalconerCoActivationProcedure method) (pyCGM2.EMG.coactivationProcedures.UnithanCoActivationProcedure method) (pyCGM2.EMG.discreteEmgProcedures.AmplitudesProcedure method) (pyCGM2.EMG.discreteEmgProcedures.DiscreteEmgProcedure method) (pyCGM2.EMG.emgFilters.BasicEmgProcessingFilter method) (pyCGM2.EMG.emgFilters.DiscreteEMGFilter method) (pyCGM2.EMG.emgFilters.EmgCoActivationFilter method) (pyCGM2.EMG.emgFilters.EmgEnvelopProcessingFilter method) (pyCGM2.EMG.emgFilters.EmgNormalisationProcessingFilter method) (pyCGM2.EMG.emgManager.EmgManager method) (pyCGM2.enums.AnalysisSection method) (pyCGM2.enums.BodyPart method) (pyCGM2.enums.BodyPartPlot method) (pyCGM2.enums.DataType method) (pyCGM2.enums.EclipseType method) (pyCGM2.enums.EmgAmplitudeNormalization method) (pyCGM2.enums.HarringtonPredictor method) (pyCGM2.enums.JointCalibrationMethod method) (pyCGM2.enums.MomentProjection method) (pyCGM2.enums.motionMethod method) (pyCGM2.enums.SegmentSide method) (pyCGM2.Events.eventFilters.EventFilter method) (pyCGM2.Events.eventProcedures.EventProcedure method) (pyCGM2.Events.eventProcedures.ZeniProcedure method) (pyCGM2.IMU.imu.Imu method) (pyCGM2.IMU.imuFilters.ImuReaderFilter method) (pyCGM2.IMU.opensense.interface.opensenseFilters.opensenseInterfaceImuInverseKinematicFilter method) (pyCGM2.IMU.opensense.interface.opensenseFilters.opensenseInterfaceImuPlacerFilter method) (pyCGM2.IMU.opensense.interface.procedures.opensenseImuKinematicFitterProcedure.ImuInverseKinematicXMLProcedure method) (pyCGM2.IMU.opensense.interface.procedures.opensenseImuPlacerInterfaceProcedure.ImuPlacerXMLProcedure method) (pyCGM2.IMU.Procedures.imuMotionProcedure.GlobalAngleMotionProcedure method) (pyCGM2.IMU.Procedures.imuMotionProcedure.ImuMotionProcedure method) (pyCGM2.IMU.Procedures.imuMotionProcedure.QuaternionMotionProcedure method) (pyCGM2.IMU.Procedures.imuMotionProcedure.RealignedMotionProcedure method) (pyCGM2.IMU.Procedures.imuReaderProcedures.C3dBlueTridentProcedure method) (pyCGM2.IMU.Procedures.imuReaderProcedures.CsvProcedure method) (pyCGM2.IMU.Procedures.imuReaderProcedures.DataframeProcedure method) (pyCGM2.IMU.Procedures.imuReaderProcedures.ImuReaderProcedure method) (pyCGM2.IMU.Procedures.relativeImuAngleProcedures.RelativeAnglesProcedure method) (pyCGM2.Inspector.inspectorFilters.InspectorFilter method) (pyCGM2.Inspector.inspectorProcedures.InspectorProcedure method) (pyCGM2.Inspector.inspectorProcedures.MarkerPresenceDetectionProcedure method) (pyCGM2.Model.bodySegmentParameters.Bsp method) (pyCGM2.Model.CGM2.cgm.CGM method) (pyCGM2.Model.CGM2.cgm.CGM1 method) (pyCGM2.Model.CGM2.cgm2.CGM2_1 method) (pyCGM2.Model.CGM2.cgm2.CGM2_2 method) (pyCGM2.Model.CGM2.cgm2.CGM2_3 method) (pyCGM2.Model.CGM2.cgm2.CGM2_4 method) (pyCGM2.Model.CGM2.cgm2.CGM2_5 method) (pyCGM2.Model.frame.Frame method) (pyCGM2.Model.frame.Node method) (pyCGM2.Model.model.AnatomicalReferential method) (pyCGM2.Model.model.ClinicalDescriptor method) (pyCGM2.Model.model.Joint method) (pyCGM2.Model.model.Model method) (pyCGM2.Model.model.Model6Dof method) (pyCGM2.Model.model.Referential method) (pyCGM2.Model.model.Segment method) (pyCGM2.Model.model.TechnicalReferential method) (pyCGM2.Model.modelDecorator.AnkleCalibrationDecorator method) (pyCGM2.Model.modelDecorator.Cgm1ManualOffsets method) (pyCGM2.Model.modelDecorator.DecoratorModel method) (pyCGM2.Model.modelDecorator.HipJointCenterDecorator method) (pyCGM2.Model.modelDecorator.Kad method) (pyCGM2.Model.modelDecorator.KneeCalibrationDecorator method) (pyCGM2.Model.modelFilters.CentreOfMassFilter method) (pyCGM2.Model.modelFilters.CGMLowerlimbInverseDynamicProcedure method) (pyCGM2.Model.modelFilters.CoordinateSystemDisplayFilter method) (pyCGM2.Model.modelFilters.ForcePlateAssemblyFilter method) (pyCGM2.Model.modelFilters.GeneralCalibrationProcedure method) (pyCGM2.Model.modelFilters.GeneralCoordinateSystemProcedure method) (pyCGM2.Model.modelFilters.GroundReactionForceAdapterFilter method) (pyCGM2.Model.modelFilters.GroundReactionIntegrationFilter method) (pyCGM2.Model.modelFilters.InverseDynamicFilter method) (pyCGM2.Model.modelFilters.InverseDynamicProcedure method) (pyCGM2.Model.modelFilters.JointPowerFilter method) (pyCGM2.Model.modelFilters.ModelAbsoluteAnglesFilter method) (pyCGM2.Model.modelFilters.ModelCalibrationFilter method) (pyCGM2.Model.modelFilters.ModelCoordinateSystemProcedure method) (pyCGM2.Model.modelFilters.ModelJCSFilter method) (pyCGM2.Model.modelFilters.ModelMotionCorrectionFilter method) (pyCGM2.Model.modelFilters.ModelMotionFilter method) (pyCGM2.Model.modelFilters.ModelQualityFilter method) (pyCGM2.Model.modelFilters.StaticCalibrationProcedure method) (pyCGM2.Model.Opensim.interface.opensimInterface.opensimXmlInterface method) (pyCGM2.Model.Opensim.interface.opensimInterface.osimCgmInterface method) (pyCGM2.Model.Opensim.interface.opensimInterface.osimInterface method) (pyCGM2.Model.Opensim.interface.opensimInterfaceFilters.opensimInterfaceAnalysesFilter method) (pyCGM2.Model.Opensim.interface.opensimInterfaceFilters.opensimInterfaceInverseDynamicsFilter method) (pyCGM2.Model.Opensim.interface.opensimInterfaceFilters.opensimInterfaceInverseKinematicsFilter method) (pyCGM2.Model.Opensim.interface.opensimInterfaceFilters.opensimInterfaceScalingFilter method) (pyCGM2.Model.Opensim.interface.opensimInterfaceFilters.opensimInterfaceStaticOptimizationFilter method) (pyCGM2.Model.Opensim.interface.procedures.analysisReport.opensimAnalysesInterfaceProcedure.AnalysesXmlCgmDrivenModelProcedure method) (pyCGM2.Model.Opensim.interface.procedures.analysisReport.opensimAnalysesInterfaceProcedure.AnalysesXmlCgmProcedure method) (pyCGM2.Model.Opensim.interface.procedures.analysisReport.opensimAnalysesInterfaceProcedure.AnalysesXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.inverseDynamics.opensimInverseDynamicsInterfaceProcedure.InverseDynamicsXmlCgmProcedure method) (pyCGM2.Model.Opensim.interface.procedures.inverseDynamics.opensimInverseDynamicsInterfaceProcedure.InverseDynamicsXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.inverseKinematics.opensimInverseKinematicsInterfaceProcedure.InverseKinematicXmlCgmProcedure method) (pyCGM2.Model.Opensim.interface.procedures.inverseKinematics.opensimInverseKinematicsInterfaceProcedure.InverseKinematicXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.scaling.opensimScalingInterfaceProcedure.ScalingXmlCgmProcedure method) (pyCGM2.Model.Opensim.interface.procedures.scaling.opensimScalingInterfaceProcedure.ScalingXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.staticOptimisation.opensimStaticOptimizationInterfaceProcedure.StaticOptimisationXmlCgmProcedure method) (pyCGM2.Model.Opensim.interface.procedures.staticOptimisation.opensimStaticOptimizationInterfaceProcedure.StaticOptimisationXmlProcedure method) (pyCGM2.Model.Procedures.forcePlateIntegrationProcedures.ForcePlateIntegrationProcedure method) (pyCGM2.Model.Procedures.forcePlateIntegrationProcedures.GaitForcePlateIntegrationProcedure method) (pyCGM2.Model.Procedures.modelMotionCorrection.ModelCorrectionProcedure method) (pyCGM2.Model.Procedures.modelMotionCorrection.Naim2019ThighMisaligmentCorrectionProcedure method) (pyCGM2.Model.Procedures.modelQuality.GeneralScoreResidualProcedure method) (pyCGM2.Model.Procedures.modelQuality.ModelScoreResidualProcedure method) (pyCGM2.Model.Procedures.modelQuality.QualityProcedure method) (pyCGM2.Model.Procedures.modelQuality.WandAngleQualityProcedure method) (pyCGM2.Nexus.Devices.AnalogDevice method) (pyCGM2.Nexus.Devices.Channel method) (pyCGM2.Nexus.Devices.Device method) (pyCGM2.Nexus.Devices.ForcePlate method) (pyCGM2.Nexus.eclipse.EnfReader method) (pyCGM2.Nexus.eclipse.PatientEnfReader method) (pyCGM2.Nexus.eclipse.SessionEnfReader method) (pyCGM2.Nexus.eclipse.TrialEnfReader method) (pyCGM2.Nexus.nexusFilters.NexusConstructAcquisitionFilter method) (pyCGM2.Nexus.nexusFilters.NexusModelFilter method) (pyCGM2.Processing.analysis.AbstractBuilder method) (pyCGM2.Processing.analysis.Analysis method) (pyCGM2.Processing.analysis.AnalysisBuilder method) (pyCGM2.Processing.analysis.AnalysisFilter method) (pyCGM2.Processing.analysis.AnalysisStructure method) (pyCGM2.Processing.analysis.GaitAnalysisBuilder method) (pyCGM2.Processing.C3dManager.c3dManager.C3dManager method) (pyCGM2.Processing.C3dManager.c3dManagerFilters.C3dManagerFilter method) (pyCGM2.Processing.C3dManager.c3dManagerProcedures.C3dManagerProcedure method) (pyCGM2.Processing.C3dManager.c3dManagerProcedures.DistinctC3dSetProcedure method) (pyCGM2.Processing.C3dManager.c3dManagerProcedures.UniqueBtkAcqSetProcedure method) (pyCGM2.Processing.C3dManager.c3dManagerProcedures.UniqueC3dSetProcedure method) (pyCGM2.Processing.Classification.classificationFilters.ClassificationFilter method) (pyCGM2.Processing.Classification.classificationProcedures.ClassificationProcedure method) (pyCGM2.Processing.Classification.classificationProcedures.PFKEprocedure method) (pyCGM2.Processing.cycle.Cycle method) (pyCGM2.Processing.cycle.Cycles method) (pyCGM2.Processing.cycle.CyclesBuilder method) (pyCGM2.Processing.cycle.CyclesFilter method) (pyCGM2.Processing.cycle.GaitCycle method) (pyCGM2.Processing.cycle.GaitCyclesBuilder method) (pyCGM2.Processing.DiscretePoints.discretePointFilters.DiscretePointsFilter method) (pyCGM2.Processing.DiscretePoints.discretePointProcedures.BenedettiProcedure method) (pyCGM2.Processing.DiscretePoints.discretePointProcedures.DiscretePointProcedure method) (pyCGM2.Processing.DiscretePoints.discretePointProcedures.GoldbergProcedure method) (pyCGM2.Processing.DiscretePoints.discretePointProcedures.MaxMinProcedure method) (pyCGM2.Processing.exporter.AnalysisExportFilter method) (pyCGM2.Processing.exporter.XlsAnalysisExportFilter method) (pyCGM2.Processing.exporter.XlsExportDataFrameFilter method) (pyCGM2.Processing.JointPatterns.jointPatternFilters.JointPatternFilter method) (pyCGM2.Processing.JointPatterns.jointPatternProcedures.JointPatternProcedure method) (pyCGM2.Processing.JointPatterns.jointPatternProcedures.XlsJointPatternProcedure method) (pyCGM2.Processing.ProgressionFrame.progressionFrameFilters.ProgressionFrameFilter method) (pyCGM2.Processing.ProgressionFrame.progressionFrameProcedures.PelvisProgressionFrameProcedure method) (pyCGM2.Processing.ProgressionFrame.progressionFrameProcedures.PointProgressionFrameProcedure method) (pyCGM2.Processing.ProgressionFrame.progressionFrameProcedures.ProgressionFrameProcedure method) (pyCGM2.Processing.ProgressionFrame.progressionFrameProcedures.ThoraxProgressionFrameProcedure method) (pyCGM2.Processing.Representative.representativeFilters.RepresentativeCycleFilter method) (pyCGM2.Processing.Representative.representativeProcedures.RepresentativeProcedure method) (pyCGM2.Processing.Representative.representativeProcedures.Sangeux2015Procedure method) (pyCGM2.Processing.Scores.scoreFilters.ScoreFilter method) (pyCGM2.Processing.Scores.scoreProcedures.CGM1_GPS method) (pyCGM2.Processing.Scores.scoreProcedures.ScoreProcedure method) (pyCGM2.Report.normativeDatasets.NormalSTP method) (pyCGM2.Report.normativeDatasets.NormativeData method) (pyCGM2.Report.plotFilters.PlottingFilter method) (pyCGM2.Report.Viewers.comparisonPlotViewers.KinematicsPlotComparisonViewer method) (pyCGM2.Report.Viewers.comparisonPlotViewers.KineticsPlotComparisonViewer method) (pyCGM2.Report.Viewers.customPlotViewers.SaggitalGagePlotViewer method) (pyCGM2.Report.Viewers.emgPlotViewers.CoactivationEmgPlotViewer method) (pyCGM2.Report.Viewers.emgPlotViewers.EnvEmgGaitPlotPanelViewer method) (pyCGM2.Report.Viewers.emgPlotViewers.MultipleAnalysis_EnvEmgPlotPanelViewer method) (pyCGM2.Report.Viewers.emgPlotViewers.TemporalEmgPlotViewer method) (pyCGM2.Report.Viewers.groundReactionPlotViewers.NormalizedGaitGrfIntegrationPlotViewer method) (pyCGM2.Report.Viewers.groundReactionPlotViewers.NormalizedGaitMeanGrfIntegrationPlotViewer method) (pyCGM2.Report.Viewers.groundReactionPlotViewers.NormalizedGroundReactionForcePlotViewer method) (pyCGM2.Report.Viewers.musclePlotViewers.MuscleNormalizedPlotPanelViewer method) (pyCGM2.Report.Viewers.plotViewers.GpsMapPlotViewer method) (pyCGM2.Report.Viewers.plotViewers.NormalizedKinematicsPlotViewer method) (pyCGM2.Report.Viewers.plotViewers.NormalizedKineticsPlotViewer method) (pyCGM2.Report.Viewers.plotViewers.PlotViewer method) (pyCGM2.Report.Viewers.plotViewers.SpatioTemporalPlotViewer method) (pyCGM2.Report.Viewers.plotViewers.TemporalKinematicsPlotViewer method) (pyCGM2.Report.Viewers.plotViewers.TemporalKineticsPlotViewer method) _aprioriError (pyCGM2.Anomaly.anomalyDetectionProcedures.MarkerAnomalyDetectionRollingProcedure attribute) _distance_threshold (pyCGM2.Anomaly.anomalyCorrectionProcedures.MarkerAnomalyCorrectionProcedure attribute) _getSectionFromMd() (in module pyCGM2.Tools.btkTools) _method (pyCGM2.Anomaly.anomalyDetectionProcedures.MarkerAnomalyDetectionRollingProcedure attribute) _plot (pyCGM2.Anomaly.anomalyCorrectionProcedures.MarkerAnomalyCorrectionProcedure attribute) (pyCGM2.Anomaly.anomalyDetectionProcedures.MarkerAnomalyDetectionRollingProcedure attribute) _treshold (pyCGM2.Anomaly.anomalyDetectionProcedures.MarkerAnomalyDetectionRollingProcedure attribute) _window (pyCGM2.Anomaly.anomalyDetectionProcedures.MarkerAnomalyDetectionRollingProcedure attribute) A AbstractBuilder (class in pyCGM2.Processing.analysis) addAnthropoInputParameters() (pyCGM2.Model.model.Model method) addCalibrationMarkerLabel() (pyCGM2.Model.model.Segment method) addChain() (pyCGM2.Model.model.Model method) addExternalDeviceWrench() (pyCGM2.Model.model.Segment method) addForcePlateGeneralEvents() (in module pyCGM2.ForcePlates.forceplates) additionalInfos (pyCGM2.Model.model.Referential attribute) addJoint() (pyCGM2.Model.model.Model method) addMarkerLabel() (pyCGM2.Model.model.Segment method) addMotionFrame() (pyCGM2.Model.model.Referential method) addNode() (pyCGM2.Model.frame.Frame method) addNormalActivationLayer() (in module pyCGM2.Report.plot) addRectanglePatches() (in module pyCGM2.Report.plot) addSegment() (pyCGM2.Model.model.Model method) addTechnicalReferential() (pyCGM2.Model.model.Segment method) addTemporalNormalActivationLayer() (in module pyCGM2.Report.plot) addTrackingMarkerLabel() (pyCGM2.Model.model.Segment method) AmplitudesProcedure (class in pyCGM2.EMG.discreteEmgProcedures) analog_descriptiveStats() (in module pyCGM2.Processing.cycle) AnalogDevice (class in pyCGM2.Nexus.Devices) AnalysesXmlCgmDrivenModelProcedure (class in pyCGM2.Model.Opensim.interface.procedures.analysisReport.opensimAnalysesInterfaceProcedure) AnalysesXmlCgmProcedure (class in pyCGM2.Model.Opensim.interface.procedures.analysisReport.opensimAnalysesInterfaceProcedure) AnalysesXmlProcedure (class in pyCGM2.Model.Opensim.interface.procedures.analysisReport.opensimAnalysesInterfaceProcedure) Analysis (class in pyCGM2.Processing.analysis) analysis (pyCGM2.Processing.exporter.AnalysisExportFilter attribute) (pyCGM2.Processing.exporter.XlsAnalysisExportFilter attribute) ANALYSIS_KINEMATIC_LABELS_DICT (pyCGM2.Model.CGM2.cgm2.CGM2_4 attribute) ANALYSIS_KINETIC_LABELS_DICT (pyCGM2.Model.CGM2.cgm2.CGM2_4 attribute) AnalysisBuilder (class in pyCGM2.Processing.analysis) AnalysisExportFilter (class in pyCGM2.Processing.exporter) AnalysisFilter (class in pyCGM2.Processing.analysis) AnalysisSection (class in pyCGM2.enums) AnalysisStructure (class in pyCGM2.Processing.analysis) AnatomicalReferential (class in pyCGM2.Model.model) Angle (pyCGM2.enums.DataType attribute) angleAxis_TO_quaternion() (in module pyCGM2.Model.frame) angleAxis_TO_rotationMatrix() (in module pyCGM2.Model.frame) angleFrom2Vectors() (in module pyCGM2.Math.geometry) AnkleCalibrationDecorator (class in pyCGM2.Model.modelDecorator) AnomalyCorrectionFilter (class in pyCGM2.Anomaly.anomalyFilters) AnomalyCorrectionProcedure (class in pyCGM2.Anomaly.anomalyCorrectionProcedures) AnomalyDetectionFilter (class in pyCGM2.Anomaly.anomalyFilters) AnomalyDetectionProcedure (class in pyCGM2.Anomaly.anomalyDetectionProcedures) AnthropoDataAnomalyProcedure (class in pyCGM2.Anomaly.anomalyDetectionProcedures) appendAnalogs() (pyCGM2.Nexus.nexusFilters.NexusConstructAcquisitionFilter method) appendAnalysisParameters() (in module pyCGM2.Nexus.nexusTools) appendAngleFromAcq() (in module pyCGM2.Nexus.nexusTools) appendBones() (in module pyCGM2.Nexus.nexusTools) appendBtkScalarFromAcq() (in module pyCGM2.Nexus.nexusTools) appendEvents() (pyCGM2.Nexus.nexusFilters.NexusConstructAcquisitionFilter method) appendForceFromAcq() (in module pyCGM2.Nexus.nexusTools) appendForcePlateCornerAsMarker() (in module pyCGM2.ForcePlates.forceplates) appendForcePlates() (pyCGM2.Nexus.nexusFilters.NexusConstructAcquisitionFilter method) appendMarkers() (pyCGM2.Nexus.nexusFilters.NexusConstructAcquisitionFilter method) appendModelledMarkerFromAcq() (in module pyCGM2.Nexus.nexusTools) appendModelOutputs() (pyCGM2.Nexus.nexusFilters.NexusConstructAcquisitionFilter method) appendMomentFromAcq() (in module pyCGM2.Nexus.nexusTools) appendPowerFromAcq() (in module pyCGM2.Nexus.nexusTools) applyBasicDecorators() (in module pyCGM2.Model.CGM2.decorators) applyHJCDecorators() (in module pyCGM2.Model.CGM2.decorators) applyKJC_AJCDecorators() (in module pyCGM2.Model.CGM2.decorators) applyOnValidFrames() (in module pyCGM2.Tools.btkTools) applyRotation() (in module pyCGM2.Tools.btkTools) applyTranslators() (in module pyCGM2.Tools.btkTools) applyValidFramesOnOutput() (in module pyCGM2.Tools.btkTools) arrayLowPassFiltering() (in module pyCGM2.Signal.signal_processing) automaticCPdeviations() (in module pyCGM2.Lib.analysis) automaticKineticDetection() (in module pyCGM2.Tools.btkTools) B Basic (pyCGM2.enums.JointCalibrationMethod attribute) BasicEmgProcessingFilter (class in pyCGM2.EMG.emgFilters) bell() (pyCGM2.Model.modelDecorator.HipJointCenterDecorator method) bellRegression() (in module pyCGM2.Model.modelDecorator) BenedettiProcedure (class in pyCGM2.Processing.DiscretePoints.discretePointProcedures) BodyPart (class in pyCGM2.enums) BodyPartPlot (class in pyCGM2.enums) Bsp (class in pyCGM2.Model.bodySegmentParameters) btkAnalogToKtkTimeseries() (in module pyCGM2.Tools.btkTools) btkPointToKtkTimeseries() (in module pyCGM2.Tools.btkTools) build() (pyCGM2.Nexus.nexusFilters.NexusConstructAcquisitionFilter method) (pyCGM2.Processing.analysis.AnalysisFilter method) (pyCGM2.Processing.cycle.CyclesFilter method) buildTrials() (in module pyCGM2.Tools.btkTools) C C3dBlueTridentProcedure (class in pyCGM2.IMU.Procedures.imuReaderProcedures) C3dManager (class in pyCGM2.Processing.C3dManager.c3dManager) C3dManagerFilter (class in pyCGM2.Processing.C3dManager.c3dManagerFilters) C3dManagerProcedure (class in pyCGM2.Processing.C3dManager.c3dManagerProcedures) calculateAngleFrom3points() (in module pyCGM2.Tools.btkTools) calibrate() (in module pyCGM2.Lib.CGM.cgm1) (in module pyCGM2.Lib.CGM.cgm1_1) (in module pyCGM2.Lib.CGM.cgm2_1) (in module pyCGM2.Lib.CGM.cgm2_2) (in module pyCGM2.Lib.CGM.cgm2_3) (in module pyCGM2.Lib.CGM.cgm2_4) (in module pyCGM2.Lib.CGM.cgm2_5) (in module pyCGM2.Lib.CGM.musculoskeletal.cgm2_2) (in module pyCGM2.Lib.CGM.musculoskeletal.cgm2_3) (pyCGM2.Model.CGM2.cgm.CGM1 method) (pyCGM2.Model.CGM2.cgm2.CGM2_3 method) (pyCGM2.Model.CGM2.cgm2.CGM2_4 method) calibrate2dof() (pyCGM2.Model.modelDecorator.KneeCalibrationDecorator method) calibration2Dof() (in module pyCGM2.Lib.CGM.kneeCalibration) (in module pyCGM2.Model.modelDecorator) calibrationProcedure() (pyCGM2.Model.CGM2.cgm.CGM1 method) Central (pyCGM2.enums.SegmentSide attribute) CentreOfMassFilter (class in pyCGM2.Model.modelFilters) CGM (class in pyCGM2.Model.CGM2.cgm) CGM1 (class in pyCGM2.Model.CGM2.cgm) CGM1_GPS (class in pyCGM2.Processing.Scores.scoreProcedures) Cgm1ManualOffsets (class in pyCGM2.Model.modelDecorator) CGM2_1 (class in pyCGM2.Model.CGM2.cgm2) CGM2_2 (class in pyCGM2.Model.CGM2.cgm2) CGM2_3 (class in pyCGM2.Model.CGM2.cgm2) CGM2_4 (class in pyCGM2.Model.CGM2.cgm2) CGM2_5 (class in pyCGM2.Model.CGM2.cgm2) CGMLowerlimbInverseDynamicProcedure (class in pyCGM2.Model.modelFilters) changeSubjectName() (in module pyCGM2.Tools.btkTools) Channel (class in pyCGM2.Nexus.Devices) channels (pyCGM2.Nexus.Devices.AnalogDevice attribute) checkActivatedSubject() (in module pyCGM2.Nexus.nexusTools) checkCalibrationProperty() (pyCGM2.Model.model.Model method) checkForcePlateExist() (in module pyCGM2.Tools.btkTools) checkGap() (in module pyCGM2.Tools.btkTools) checkMarkers() (in module pyCGM2.Tools.btkTools) checkMetadata() (in module pyCGM2.Tools.btkTools) checkMultipleSubject() (in module pyCGM2.Tools.btkTools) checkSimilarElement() (in module pyCGM2.Utils.utils) chord() (in module pyCGM2.Model.modelDecorator) ClassificationFilter (class in pyCGM2.Processing.Classification.classificationFilters) ClassificationProcedure (class in pyCGM2.Processing.Classification.classificationProcedures) cleanAcq() (in module pyCGM2.Tools.btkTools) cleanEnf() (in module pyCGM2.Nexus.eclipse) clearEvents() (in module pyCGM2.Tools.btkTools) clearPoints() (in module pyCGM2.Tools.btkTools) ClinicalDescriptor (class in pyCGM2.Model.model) CoactivationEmgPlotViewer (class in pyCGM2.Report.Viewers.emgPlotViewers) CoActivationProcedure (class in pyCGM2.EMG.coactivationProcedures) coactivations (pyCGM2.Processing.analysis.Analysis attribute) colorContext() (in module pyCGM2.Report.plotUtils) combineForcePlate() (in module pyCGM2.ForcePlates.forceplates) compareEmgEnvelops() (in module pyCGM2.Lib.plot) compareKinematic() (in module pyCGM2.Lib.plot) compareKinetic() (in module pyCGM2.Lib.plot) compareSelectedEmgEvelops() (in module pyCGM2.Lib.plot) compute() (pyCGM2.IMU.Procedures.imuMotionProcedure.GlobalAngleMotionProcedure method) (pyCGM2.IMU.Procedures.imuMotionProcedure.QuaternionMotionProcedure method) (pyCGM2.IMU.Procedures.imuMotionProcedure.RealignedMotionProcedure method) (pyCGM2.IMU.Procedures.relativeImuAngleProcedures.RelativeAnglesProcedure method) (pyCGM2.Model.bodySegmentParameters.Bsp method) (pyCGM2.Model.modelDecorator.Cgm1ManualOffsets method) (pyCGM2.Model.modelDecorator.Kad method) (pyCGM2.Model.modelFilters.CentreOfMassFilter method) (pyCGM2.Model.modelFilters.CGMLowerlimbInverseDynamicProcedure method) (pyCGM2.Model.modelFilters.ForcePlateAssemblyFilter method) (pyCGM2.Model.modelFilters.GroundReactionForceAdapterFilter method) (pyCGM2.Model.modelFilters.GroundReactionIntegrationFilter method) (pyCGM2.Model.modelFilters.InverseDynamicFilter method) (pyCGM2.Model.modelFilters.JointPowerFilter method) (pyCGM2.Model.modelFilters.ModelAbsoluteAnglesFilter method) (pyCGM2.Model.modelFilters.ModelCalibrationFilter method) (pyCGM2.Model.modelFilters.ModelJCSFilter method) (pyCGM2.Model.modelFilters.ModelMotionFilter method) (pyCGM2.Model.Procedures.forcePlateIntegrationProcedures.GaitForcePlateIntegrationProcedure method), [1] (pyCGM2.Processing.ProgressionFrame.progressionFrameFilters.ProgressionFrameFilter method) (pyCGM2.Processing.ProgressionFrame.progressionFrameProcedures.PelvisProgressionFrameProcedure method) (pyCGM2.Processing.ProgressionFrame.progressionFrameProcedures.PointProgressionFrameProcedure method) (pyCGM2.Processing.ProgressionFrame.progressionFrameProcedures.ThoraxProgressionFrameProcedure method) (pyCGM2.Processing.Scores.scoreFilters.ScoreFilter method) computeAngle() (in module pyCGM2.Math.geometry) computeEmgEnvelopes() (pyCGM2.Processing.analysis.AnalysisBuilder method) (pyCGM2.Processing.analysis.GaitAnalysisBuilder method) computeGlobal() (pyCGM2.Model.frame.Node method) computeKinematics() (pyCGM2.Processing.analysis.AnalysisBuilder method) (pyCGM2.Processing.analysis.GaitAnalysisBuilder method) computeKinetics() (pyCGM2.Processing.analysis.AnalysisBuilder method) (pyCGM2.Processing.analysis.GaitAnalysisBuilder method) computeLocal() (pyCGM2.Model.frame.Node method) computeMotion() (pyCGM2.Model.CGM2.cgm.CGM1 method) (pyCGM2.Model.CGM2.cgm2.CGM2_4 method) computeMotionAnatomicalFrame() (pyCGM2.Model.model.Model6Dof method) computeMotionTechnicalFrame() (pyCGM2.Model.model.Model6Dof method) computeMuscleDynamic() (pyCGM2.Processing.analysis.AnalysisBuilder method) (pyCGM2.Processing.analysis.GaitAnalysisBuilder method) computeMuscleGeometry() (pyCGM2.Processing.analysis.AnalysisBuilder method) (pyCGM2.Processing.analysis.GaitAnalysisBuilder method) computeOptimizedSegmentMotion() (pyCGM2.Model.CGM2.cgm.CGM1 method) (pyCGM2.Model.CGM2.cgm2.CGM2_4 method) computeSegmental() (pyCGM2.Model.modelFilters.CGMLowerlimbInverseDynamicProcedure method) computeSpatioTemporel() (pyCGM2.Processing.analysis.GaitAnalysisBuilder method) concatenateExcelFiles() (in module pyCGM2.Utils.files) configure() (pyCGM2.Model.CGM2.cgm.CGM1 method) consistencyPlot() (in module pyCGM2.Report.plot) construcGaitCycle() (in module pyCGM2.Processing.cycle) constructFromAnglesAxis() (pyCGM2.Model.frame.Frame method) constructFromQuaternion() (pyCGM2.Model.frame.Frame method) constructMarker() (in module pyCGM2.Tools.btkTools) constructPhantom() (in module pyCGM2.Tools.btkTools) CoordinateSystemDisplayFilter (class in pyCGM2.Model.modelFilters) copyNode() (pyCGM2.Model.frame.Frame method) copyPaste() (in module pyCGM2.Utils.files) copyPasteDirectory() (in module pyCGM2.Utils.files) copySessionFolder() (in module pyCGM2.Utils.files) correct() (pyCGM2.Model.modelFilters.ModelMotionCorrectionFilter method) (pyCGM2.Model.Procedures.modelMotionCorrection.Naim2019ThighMisaligmentCorrectionProcedure method) correctForcePlateType5() (in module pyCGM2.ForcePlates.forceplates) createDir() (in module pyCGM2.Utils.files) createEvents() (in module pyCGM2.Nexus.nexusTools) createGeneralEvents() (in module pyCGM2.Nexus.nexusTools) createPhantoms() (in module pyCGM2.Tools.btkTools) CsvProcedure (class in pyCGM2.IMU.Procedures.imuReaderProcedures) custom() (pyCGM2.Model.modelDecorator.HipJointCenterDecorator method) Cycle (class in pyCGM2.Processing.cycle) Cycles (class in pyCGM2.Processing.cycle) CyclesBuilder (class in pyCGM2.Processing.cycle) CyclesFilter (class in pyCGM2.Processing.cycle) D data (pyCGM2.Processing.analysis.AnalysisStructure attribute) (pyCGM2.Report.normativeDatasets.NormalSTP attribute) (pyCGM2.Report.normativeDatasets.NormativeData attribute) DataframeProcedure (class in pyCGM2.IMU.Procedures.imuReaderProcedures) dataframes (pyCGM2.Processing.exporter.XlsExportDataFrameFilter attribute) DataType (class in pyCGM2.enums) davis() (pyCGM2.Model.modelDecorator.HipJointCenterDecorator method) davisRegression() (in module pyCGM2.Model.modelDecorator) decomposeTrackingMarkers() (pyCGM2.Model.model.Model method) decoratedModel (pyCGM2.Model.CGM2.cgm2.CGM2_1 attribute) (pyCGM2.Model.CGM2.cgm2.CGM2_2 attribute) (pyCGM2.Model.CGM2.cgm2.CGM2_3 attribute) DecoratorModel (class in pyCGM2.Model.modelDecorator) definitions (pyCGM2.Model.modelFilters.GeneralCoordinateSystemProcedure attribute) (pyCGM2.Model.modelFilters.ModelCoordinateSystemProcedure attribute) deleteContextEvents() (in module pyCGM2.Tools.btkTools) deleteDirectory() (in module pyCGM2.Utils.files) description (pyCGM2.Events.eventProcedures.ZeniProcedure attribute) (pyCGM2.Nexus.Devices.Channel attribute) descriptivePlot() (in module pyCGM2.Report.plot) detect() (pyCGM2.EMG.discreteEmgProcedures.AmplitudesProcedure method) (pyCGM2.Events.eventFilters.EventFilter method) (pyCGM2.Events.eventProcedures.ZeniProcedure method) (pyCGM2.Processing.DiscretePoints.discretePointProcedures.BenedettiProcedure method) (pyCGM2.Processing.DiscretePoints.discretePointProcedures.GoldbergProcedure method) (pyCGM2.Processing.DiscretePoints.discretePointProcedures.MaxMinProcedure method) detect_cusum() (in module pyCGM2.Signal.detector) detect_onset() (in module pyCGM2.Signal.detector) detect_peaks() (in module pyCGM2.Signal.detector) detect_seq() (in module pyCGM2.Signal.detector) detectCalibrationMethods() (pyCGM2.Model.CGM2.cgm.CGM class method) detectGaitConsecutiveForcePlates() (in module pyCGM2.ForcePlates.forceplates) detectMeasurementType() (in module pyCGM2.QTM.qtmTools) detectPattern() (pyCGM2.Processing.JointPatterns.jointPatternProcedures.XlsJointPatternProcedure method) detectStart_fromThreshold() (in module pyCGM2.Signal.detector) detectValue() (pyCGM2.Processing.JointPatterns.jointPatternProcedures.XlsJointPatternProcedure method) Determinist (pyCGM2.enums.motionMethod attribute) Device (class in pyCGM2.Nexus.Devices) DiscreteEMGFilter (class in pyCGM2.EMG.emgFilters) DiscreteEmgProcedure (class in pyCGM2.EMG.discreteEmgProcedures) DiscretePointProcedure (class in pyCGM2.Processing.DiscretePoints.discretePointProcedures) DiscretePointsFilter (class in pyCGM2.Processing.DiscretePoints.discretePointFilters) display() (pyCGM2.Model.modelFilters.CoordinateSystemDisplayFilter method) displayMotionCoordinateSystem() (pyCGM2.Model.model.Model method) displayMotionViconCoordinateSystem() (pyCGM2.Model.model.Model method) displaySignificantDiffererence() (pyCGM2.Report.plotFilters.PlottingFilter method) displayStaticCoordinateSystem() (pyCGM2.Model.model.Model method) Distal (pyCGM2.enums.MomentProjection attribute) DistinctC3dSetProcedure (class in pyCGM2.Processing.C3dManager.c3dManagerProcedures) downsample() (in module pyCGM2.Signal.signal_processing) (pyCGM2.IMU.imu.Imu method) (pyCGM2.IMU.Procedures.imuReaderProcedures.ImuReaderProcedure method) downSampleExternalDeviceWrenchs() (pyCGM2.Model.model.Segment method) E EclipseType (class in pyCGM2.enums) Emg (pyCGM2.enums.AnalysisSection attribute) EmgAmplitudeNormalization (class in pyCGM2.enums) EmgCoActivationFilter (class in pyCGM2.EMG.emgFilters) EmgEnvelopProcessingFilter (class in pyCGM2.EMG.emgFilters) emgInfo (pyCGM2.Processing.analysis.Analysis attribute) EmgManager (class in pyCGM2.EMG.emgManager) EmgNormalisationProcessingFilter (class in pyCGM2.EMG.emgFilters) emgStats (pyCGM2.Processing.analysis.Analysis attribute) enableEmg() (pyCGM2.Processing.C3dManager.c3dManagerFilters.C3dManagerFilter method) enableKinematic() (pyCGM2.Processing.C3dManager.c3dManagerFilters.C3dManagerFilter method) enableKinetic() (pyCGM2.Processing.C3dManager.c3dManagerFilters.C3dManagerFilter method) enableMuscleDynamic() (pyCGM2.Processing.C3dManager.c3dManagerFilters.C3dManagerFilter method) enableMuscleGeometry() (pyCGM2.Processing.C3dManager.c3dManagerFilters.C3dManagerFilter method) enableSpatioTemporal() (pyCGM2.Processing.C3dManager.c3dManagerFilters.C3dManagerFilter method) EnfReader (class in pyCGM2.Nexus.eclipse) enumFromtext() (in module pyCGM2.enums) enveloppe() (in module pyCGM2.Signal.signal_processing) EnvEmgGaitPlotPanelViewer (class in pyCGM2.Report.Viewers.emgPlotViewers) eraseNodes() (pyCGM2.Model.frame.Frame method) euler_xyz() (in module pyCGM2.Math.euler) euler_xzy() (in module pyCGM2.Math.euler) euler_yxz() (in module pyCGM2.Math.euler) euler_yzx() (in module pyCGM2.Math.euler) euler_zxy() (in module pyCGM2.Math.euler) euler_zyx() (in module pyCGM2.Math.euler) EventFilter (class in pyCGM2.Events.eventFilters) EventProcedure (class in pyCGM2.Events.eventProcedures) experimentalInfo (pyCGM2.Processing.analysis.Analysis attribute) export() (pyCGM2.Processing.exporter.AnalysisExportFilter method) (pyCGM2.Processing.exporter.XlsAnalysisExportFilter method) (pyCGM2.Processing.exporter.XlsExportDataFrameFilter method) export_CgmToMot() (in module pyCGM2.Tools.opensimTools) exportAnalysis() (in module pyCGM2.Lib.analysis) exportC3d() (pyCGM2.Nexus.nexusFilters.NexusConstructAcquisitionFilter method) F FalconerCoActivationProcedure (class in pyCGM2.EMG.coactivationProcedures) finalize() (pyCGM2.IMU.opensense.interface.procedures.opensenseImuKinematicFitterProcedure.ImuInverseKinematicXMLProcedure method) (pyCGM2.IMU.opensense.interface.procedures.opensenseImuPlacerInterfaceProcedure.ImuPlacerXMLProcedure method) (pyCGM2.Model.Opensim.interface.procedures.analysisReport.opensimAnalysesInterfaceProcedure.AnalysesXmlCgmDrivenModelProcedure method) (pyCGM2.Model.Opensim.interface.procedures.analysisReport.opensimAnalysesInterfaceProcedure.AnalysesXmlCgmProcedure method) (pyCGM2.Model.Opensim.interface.procedures.analysisReport.opensimAnalysesInterfaceProcedure.AnalysesXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.inverseDynamics.opensimInverseDynamicsInterfaceProcedure.InverseDynamicsXmlCgmProcedure method) (pyCGM2.Model.Opensim.interface.procedures.inverseDynamics.opensimInverseDynamicsInterfaceProcedure.InverseDynamicsXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.inverseKinematics.opensimInverseKinematicsInterfaceProcedure.InverseKinematicXmlCgmProcedure method) (pyCGM2.Model.Opensim.interface.procedures.inverseKinematics.opensimInverseKinematicsInterfaceProcedure.InverseKinematicXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.scaling.opensimScalingInterfaceProcedure.ScalingXmlCgmProcedure method) (pyCGM2.Model.Opensim.interface.procedures.scaling.opensimScalingInterfaceProcedure.ScalingXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.staticOptimisation.opensimStaticOptimizationInterfaceProcedure.StaticOptimisationXmlCgmProcedure method) (pyCGM2.Model.Opensim.interface.procedures.staticOptimisation.opensimStaticOptimizationInterfaceProcedure.StaticOptimisationXmlProcedure method) findDynamic() (in module pyCGM2.QTM.qtmTools) findKneeCalibration() (in module pyCGM2.QTM.qtmTools) findMarkerGap() (in module pyCGM2.Tools.btkTools) findStatic() (in module pyCGM2.QTM.qtmTools) findValidFrames() (in module pyCGM2.Tools.btkTools) firstOrderFiniteDifference() (in module pyCGM2.Math.derivation) fitting() (in module pyCGM2.Lib.CGM.cgm1) (in module pyCGM2.Lib.CGM.cgm1_1) (in module pyCGM2.Lib.CGM.cgm2_1) (in module pyCGM2.Lib.CGM.cgm2_2) (in module pyCGM2.Lib.CGM.cgm2_3) (in module pyCGM2.Lib.CGM.cgm2_4) (in module pyCGM2.Lib.CGM.cgm2_5) (in module pyCGM2.Lib.CGM.musculoskeletal.cgm2_2) (in module pyCGM2.Lib.CGM.musculoskeletal.cgm2_3) footJointCentreFromMet() (in module pyCGM2.Model.modelDecorator) footOffOffset (pyCGM2.Events.eventProcedures.ZeniProcedure attribute) footReactionMotFile() (in module pyCGM2.Tools.opensimTools) footStrikeOffset (pyCGM2.Events.eventProcedures.ZeniProcedure attribute) Force (pyCGM2.enums.DataType attribute) ForcePlate (class in pyCGM2.Nexus.Devices) ForcePlateAnomalyProcedure (class in pyCGM2.Anomaly.anomalyDetectionProcedures) ForcePlateAssemblyFilter (class in pyCGM2.Model.modelFilters) forcePlateFiltering() (in module pyCGM2.Signal.signal_processing) forcePlateInfo (pyCGM2.Nexus.Devices.ForcePlate attribute) ForcePlateIntegration() (in module pyCGM2.ForcePlates.forceplates) ForcePlateIntegrationProcedure (class in pyCGM2.Model.Procedures.forcePlateIntegrationProcedures) Frame (class in pyCGM2.Model.frame) fromAjcMarker() (pyCGM2.Model.modelDecorator.AnkleCalibrationDecorator method) fromHjcMarker() (pyCGM2.Model.modelDecorator.HipJointCenterDecorator method) fromKjcMarker() (pyCGM2.Model.modelDecorator.KneeCalibrationDecorator method) FullBody (pyCGM2.enums.BodyPart attribute) G GaitAnalysisBuilder (class in pyCGM2.Processing.analysis) gaitConsistencyPlot() (in module pyCGM2.Report.plot) GaitCycle (class in pyCGM2.Processing.cycle) GaitCyclesBuilder (class in pyCGM2.Processing.cycle) gaitDescriptivePlot() (in module pyCGM2.Report.plot) GaitEventAnomalyProcedure (class in pyCGM2.Anomaly.anomalyDetectionProcedures) GaitForcePlateIntegrationProcedure (class in pyCGM2.Model.Procedures.forcePlateIntegrationProcedures) gaitMeanPlot() (in module pyCGM2.Report.plot) GeneralCalibrationProcedure (class in pyCGM2.Model.modelFilters) GeneralCoordinateSystemProcedure (class in pyCGM2.Model.modelFilters) GeneralScoreResidualProcedure (class in pyCGM2.Model.Procedures.modelQuality) generate() (pyCGM2.Processing.C3dManager.c3dManagerFilters.C3dManagerFilter method) (pyCGM2.Processing.C3dManager.c3dManagerProcedures.DistinctC3dSetProcedure method) (pyCGM2.Processing.C3dManager.c3dManagerProcedures.UniqueBtkAcqSetProcedure method) (pyCGM2.Processing.C3dManager.c3dManagerProcedures.UniqueC3dSetProcedure method) generateEmptyENF() (in module pyCGM2.Nexus.eclipse) get() (pyCGM2.Nexus.eclipse.PatientEnfReader method) (pyCGM2.Nexus.eclipse.SessionEnfReader method) (pyCGM2.Nexus.eclipse.TrialEnfReader method) get_creation_date() (in module pyCGM2.QTM.qtmTools) get_markerLabelForPiGStatic() (pyCGM2.Model.CGM2.cgm.CGM class method) get_modelled_trials() (in module pyCGM2.QTM.qtmTools) getAbdAddAnkleJointOffset() (pyCGM2.Model.CGM2.cgm.CGM1 method) getAcceleration() (pyCGM2.IMU.imu.Imu method) getAcq() (pyCGM2.Model.Opensim.interface.opensimInterfaceFilters.opensimInterfaceAnalysesFilter method) (pyCGM2.Model.Opensim.interface.opensimInterfaceFilters.opensimInterfaceInverseDynamicsFilter method) (pyCGM2.Model.Opensim.interface.opensimInterfaceFilters.opensimInterfaceInverseKinematicsFilter method) (pyCGM2.Model.Opensim.interface.opensimInterfaceFilters.opensimInterfaceStaticOptimizationFilter method) getActiveSubject() (in module pyCGM2.Nexus.nexusTools) getAllParamAnalysis() (in module pyCGM2.Tools.btkTools) GetAnalogNames() (in module pyCGM2.Tools.btkTools) getAnalogTimeSequenceData() (pyCGM2.Processing.cycle.Cycle method) getAnalogTimeSequenceDataNormalized() (pyCGM2.Processing.cycle.Cycle method) getAnalysisSection() (in module pyCGM2.Processing.analysisHandler) getAngleAxis() (pyCGM2.IMU.imu.Imu method) (pyCGM2.Model.frame.Frame method) getAngularAcceleration() (pyCGM2.Model.model.Segment method) getAngularVelocity() (pyCGM2.IMU.imu.Imu method) (pyCGM2.Model.model.Segment method) getAnomaly() (pyCGM2.Anomaly.anomalyDetectionProcedures.AnomalyDetectionProcedure method) getAxisTrajectory() (pyCGM2.Model.model.Referential method) getBodies() (pyCGM2.Model.Opensim.interface.opensimInterface.osimInterface method) getBodyPart() (pyCGM2.Model.model.Model method) getC3d() (pyCGM2.Nexus.eclipse.TrialEnfReader method) getC3dFiles() (in module pyCGM2.Utils.files) getCalibratedOsimName() (pyCGM2.IMU.opensense.interface.opensenseFilters.opensenseInterfaceImuPlacerFilter method) getCentreOfMass() (pyCGM2.Model.model.Model method) getChannel() (pyCGM2.EMG.emgManager.EmgManager method) getChannels() (pyCGM2.EMG.emgManager.EmgManager method) (pyCGM2.Nexus.Devices.AnalogDevice method) getChannelSection() (pyCGM2.EMG.emgManager.EmgManager method) getClinicalDescriptor() (pyCGM2.Model.model.Model method) getComAcceleration() (pyCGM2.Model.model.Segment method) getComTrajectory() (pyCGM2.Model.model.Segment method) getComVelocity() (pyCGM2.Model.model.Segment method) getContext() (pyCGM2.Nexus.Devices.ForcePlate method) getCoordinates() (pyCGM2.Model.Opensim.interface.opensimInterface.osimInterface method) getCorners() (pyCGM2.Nexus.Devices.ForcePlate method) getCurrentMarkedEnfs() (in module pyCGM2.Nexus.eclipse) getCurrentMarkedNodes() (in module pyCGM2.Nexus.eclipse) getDescription() (pyCGM2.Model.frame.Node method) (pyCGM2.Nexus.Devices.Channel method) (pyCGM2.Nexus.Devices.ForcePlate method) getDeviceFrequency() (pyCGM2.Nexus.Devices.Device method) getDeviceName() (pyCGM2.Nexus.Devices.Device method) getDirname() (in module pyCGM2.Utils.files) getDirs() (in module pyCGM2.Utils.files) getEmg() (pyCGM2.Processing.cycle.CyclesBuilder method) (pyCGM2.Processing.cycle.GaitCyclesBuilder method) getEnfFiles() (in module pyCGM2.Nexus.eclipse) getEvents() (pyCGM2.Processing.cycle.Cycle method) getExistFrames() (pyCGM2.Model.model.Segment method) getFile() (pyCGM2.Nexus.eclipse.EnfReader method) getFileCreationDate() (in module pyCGM2.Utils.files) getFilename() (in module pyCGM2.QTM.qtmTools) (in module pyCGM2.Utils.files) getFiles() (in module pyCGM2.Utils.files) getFootOffset() (pyCGM2.Model.CGM2.cgm.CGM1 method) getForcePlateAssigment() (in module pyCGM2.QTM.qtmTools) (pyCGM2.Nexus.eclipse.TrialEnfReader method) getForcePlateAssignment() (in module pyCGM2.Nexus.nexusTools) getForcePlateWrench() (in module pyCGM2.Tools.btkTools) getForceUnit() (pyCGM2.Nexus.Devices.ForcePlate method) getFrameBoundaries() (in module pyCGM2.Tools.btkTools) getGlobal() (pyCGM2.Model.frame.Node method) getGlobalCoP() (pyCGM2.Nexus.Devices.ForcePlate method) getGlobalForce() (pyCGM2.Nexus.Devices.ForcePlate method) getGlobalMoment() (pyCGM2.Nexus.Devices.ForcePlate method) getGlobalPosition() (pyCGM2.Model.frame.Frame method) getHindFootOffset() (pyCGM2.Model.CGM2.cgm2.CGM2_4 method) getIKweightSet() (in module pyCGM2.Utils.files) getJoint() (pyCGM2.Model.model.Model method) getJointList() (pyCGM2.Model.model.Model method) getKinematicCycleNumbers() (pyCGM2.Processing.analysis.Analysis method) getKinematics() (pyCGM2.Processing.cycle.CyclesBuilder method) (pyCGM2.Processing.cycle.GaitCyclesBuilder method) getKinetics() (pyCGM2.Processing.cycle.CyclesBuilder method) (pyCGM2.Processing.cycle.GaitCyclesBuilder method) getKneeFunctionCalibMethod() (in module pyCGM2.QTM.qtmTools) getLabel() (pyCGM2.Model.frame.Node method) (pyCGM2.Nexus.Devices.Channel method) getLabelsFromScalar() (in module pyCGM2.Tools.btkTools) getLocal() (pyCGM2.Model.frame.Node method) getLocalOrigin() (pyCGM2.Nexus.Devices.ForcePlate method) getLocalReactionForce() (pyCGM2.Nexus.Devices.ForcePlate method) getLocalReactionMoment() (pyCGM2.Nexus.Devices.ForcePlate method) getMagnetometer() (pyCGM2.IMU.imu.Imu method) GetMarkerNames() (in module pyCGM2.Tools.btkTools) getMomentUnit() (pyCGM2.Nexus.Devices.ForcePlate method) getMotion() (pyCGM2.IMU.imu.Imu method) getMp() (in module pyCGM2.Utils.files) getMpFileContent() (in module pyCGM2.Utils.files) getMuscleDynamic() (pyCGM2.Processing.cycle.CyclesBuilder method) (pyCGM2.Processing.cycle.GaitCyclesBuilder method) getMuscleGeometry() (pyCGM2.Processing.cycle.CyclesBuilder method) (pyCGM2.Processing.cycle.GaitCyclesBuilder method) getMuscles() (pyCGM2.EMG.emgManager.EmgManager method) (pyCGM2.Model.Opensim.interface.opensimInterface.osimInterface method) getMuscles_bySide() (pyCGM2.Model.Opensim.interface.opensimInterface.osimInterface method) getNexusSubjectMp() (in module pyCGM2.Nexus.nexusUtils) getNode_byIndex() (pyCGM2.Model.frame.Frame method) getNode_byLabel() (pyCGM2.Model.frame.Frame method) getNodeIndex() (pyCGM2.Model.frame.Frame method) getNodeLabels() (pyCGM2.Model.frame.Frame method) getNodes() (pyCGM2.Model.frame.Frame method) getNodeTrajectory() (pyCGM2.Model.model.Referential method) getNormalActivity() (pyCGM2.EMG.emgManager.EmgManager method) getNumberOfCycle() (in module pyCGM2.Processing.analysisHandler) getNumberOfForcePlate() (in module pyCGM2.Tools.btkTools) getNumberOfModelOutputs() (in module pyCGM2.Tools.btkTools) getOrientation() (pyCGM2.Nexus.Devices.ForcePlate method) getOrigin() (pyCGM2.Nexus.Devices.ForcePlate method) getOriginTrajectory() (pyCGM2.Model.model.Referential method) getOsim() (pyCGM2.Model.Opensim.interface.opensimInterfaceFilters.opensimInterfaceScalingFilter method) getOsimName() (pyCGM2.Model.Opensim.interface.opensimInterfaceFilters.opensimInterfaceScalingFilter method) getOutput() (pyCGM2.EMG.emgFilters.DiscreteEMGFilter method) (pyCGM2.Processing.DiscretePoints.discretePointFilters.DiscretePointsFilter method) getOutputNames() (pyCGM2.Nexus.Devices.Device method) getParamAnalysis() (in module pyCGM2.Tools.btkTools) getPath() (pyCGM2.Nexus.eclipse.EnfReader method) getPatientInfos() (pyCGM2.Nexus.eclipse.PatientEnfReader method) getPatterns() (pyCGM2.Processing.JointPatterns.jointPatternFilters.JointPatternFilter method) getPhases() (in module pyCGM2.Processing.analysisHandler) getPhysicalOrigin() (pyCGM2.Nexus.Devices.ForcePlate method) getPointTimeSequenceData() (pyCGM2.Processing.cycle.Cycle method) getPointTimeSequenceDataNormalized() (pyCGM2.Processing.cycle.Cycle method) getProcessingSection() (pyCGM2.EMG.emgManager.EmgManager method) getProperty() (pyCGM2.Model.model.Model method) getQuaternion() (pyCGM2.Model.frame.Frame method) getQuaternions() (pyCGM2.IMU.imu.Imu method) getReferential() (pyCGM2.Model.model.Segment method) getRotation() (pyCGM2.Model.frame.Frame method) getScalar() (in module pyCGM2.Tools.btkTools) getSection() (pyCGM2.Nexus.eclipse.EnfReader method) getSegment() (pyCGM2.Model.model.Model method) getSegmentByIndex() (pyCGM2.Model.model.Model method) getSegmentIndex() (pyCGM2.Model.model.Model method) getSegmentList() (pyCGM2.Model.model.Model method) getSessionInfos() (pyCGM2.Nexus.eclipse.SessionEnfReader method) getShankOffsets() (pyCGM2.Model.CGM2.cgm.CGM1 method) getSides() (pyCGM2.EMG.emgManager.EmgManager method) getSimilarElement() (in module pyCGM2.Utils.utils) getSoup() (pyCGM2.Model.Opensim.interface.opensimInterface.opensimXmlInterface method) getSpatioTemporal() (pyCGM2.Processing.cycle.CyclesBuilder method) (pyCGM2.Processing.cycle.GaitCyclesBuilder method) getSpatioTemporalParameter() (pyCGM2.Processing.cycle.GaitCycle method) getStartEndEvents() (in module pyCGM2.Tools.btkTools) getState() (pyCGM2.Events.eventFilters.EventFilter method) getStaticIkTargets() (pyCGM2.Model.CGM2.cgm2.CGM2_2 method) (pyCGM2.Model.CGM2.cgm2.CGM2_3 method) getStaticMarkers() (pyCGM2.Model.CGM2.cgm.CGM1 method) getStaticTrackingMarkers() (pyCGM2.Model.CGM2.cgm.CGM method) getThighOffset() (pyCGM2.Model.CGM2.cgm.CGM1 method) getTibialTorsionOffset() (pyCGM2.Model.CGM2.cgm.CGM1 method) getTrackingMarkers() (pyCGM2.Model.CGM2.cgm.CGM1 method) getTranslation() (pyCGM2.Model.frame.Frame method) getTranslators() (in module pyCGM2.Utils.files) getTrialInfos() (pyCGM2.Nexus.eclipse.TrialEnfReader method) getUnit() (pyCGM2.Nexus.Devices.AnalogDevice method) (pyCGM2.Nexus.Devices.Channel method) getValidFrames() (in module pyCGM2.Tools.btkTools) getValues() (in module pyCGM2.Processing.analysisHandler) (pyCGM2.Nexus.Devices.Channel method) (pyCGM2.Processing.JointPatterns.jointPatternFilters.JointPatternFilter method) getVisibleMarkersAtFrame() (in module pyCGM2.Tools.btkTools) Global (pyCGM2.enums.MomentProjection attribute) GlobalAngleMotionProcedure (class in pyCGM2.IMU.Procedures.imuMotionProcedure) GoldbergProcedure (class in pyCGM2.Processing.DiscretePoints.discretePointProcedures) gps (pyCGM2.Processing.analysis.Analysis attribute) GpsMapPlotViewer (class in pyCGM2.Report.Viewers.plotViewers) greatTrochanterOffset() (pyCGM2.Model.modelDecorator.HipJointCenterDecorator method) GroundReactionForceAdapterFilter (class in pyCGM2.Model.modelFilters) GroundReactionIntegrationFilter (class in pyCGM2.Model.modelFilters) gvs (pyCGM2.Processing.analysis.Analysis attribute) H hara() (pyCGM2.Model.modelDecorator.HipJointCenterDecorator method) haraRegression() (in module pyCGM2.Model.modelDecorator) harrington() (pyCGM2.Model.modelDecorator.HipJointCenterDecorator method) HarringtonPredictor (class in pyCGM2.enums) harringtonRegression() (in module pyCGM2.Model.modelDecorator) hasChild() (in module pyCGM2.Tools.btkTools) highPass() (in module pyCGM2.Signal.signal_processing) HipJointCenterDecorator (class in pyCGM2.Model.modelDecorator) homogeneizeArguments() (in module pyCGM2.Utils.utils) I id (pyCGM2.Nexus.Devices.Device attribute) ignoreNormalActivty() (pyCGM2.Report.Viewers.emgPlotViewers.TemporalEmgPlotViewer method) Imu (class in pyCGM2.IMU.imu) ImuInverseKinematicXMLProcedure (class in pyCGM2.IMU.opensense.interface.procedures.opensenseImuKinematicFitterProcedure) ImuMotionProcedure (class in pyCGM2.IMU.Procedures.imuMotionProcedure) ImuPlacerXMLProcedure (class in pyCGM2.IMU.opensense.interface.procedures.opensenseImuPlacerInterfaceProcedure) ImuReaderFilter (class in pyCGM2.IMU.imuFilters) ImuReaderProcedure (class in pyCGM2.IMU.Procedures.imuReaderProcedures) initMetaData() (pyCGM2.Nexus.nexusFilters.NexusConstructAcquisitionFilter method) InspectorFilter (class in pyCGM2.Inspector.inspectorFilters) InspectorProcedure (class in pyCGM2.Inspector.inspectorProcedures) interpretCriteria() (pyCGM2.Processing.JointPatterns.jointPatternFilters.JointPatternFilter class method) InverseDynamicFilter (class in pyCGM2.Model.modelFilters) InverseDynamicProcedure (class in pyCGM2.Model.modelFilters) InverseDynamicsXmlCgmProcedure (class in pyCGM2.Model.Opensim.interface.procedures.inverseDynamics.opensimInverseDynamicsInterfaceProcedure) InverseDynamicsXmlProcedure (class in pyCGM2.Model.Opensim.interface.procedures.inverseDynamics.opensimInverseDynamicsInterfaceProcedure) InverseKinematicXmlCgmProcedure (class in pyCGM2.Model.Opensim.interface.procedures.inverseKinematics.opensimInverseKinematicsInterfaceProcedure) InverseKinematicXmlProcedure (class in pyCGM2.Model.Opensim.interface.procedures.inverseKinematics.opensimInverseKinematicsInterfaceProcedure) is_json() (in module pyCGM2.Utils.files) is_yaml() (in module pyCGM2.Utils.files) isAnalogExist() (in module pyCGM2.Tools.btkTools) isC3dExist() (pyCGM2.Nexus.eclipse.TrialEnfReader method) isCalibrationProperty() (pyCGM2.Model.model.Model method) isEventExist() (in module pyCGM2.Tools.btkTools) isExternalDeviceWrenchsConnected() (pyCGM2.Model.model.Segment method) isGap() (in module pyCGM2.Tools.btkTools) isInRange() (in module pyCGM2.Utils.utils) isKeyExist() (in module pyCGM2.Processing.analysisHandler) isKineticFlag() (in module pyCGM2.Tools.btkTools) isNodeExist() (pyCGM2.Model.frame.Frame method) isPhantom() (in module pyCGM2.Tools.btkTools) isPointExist() (in module pyCGM2.Tools.btkTools) isPointsExist() (in module pyCGM2.Tools.btkTools) isProperty() (pyCGM2.Model.model.Model method) isType() (in module pyCGM2.QTM.qtmTools) J JCS (pyCGM2.enums.MomentProjection attribute) JCS_Dual (pyCGM2.enums.MomentProjection attribute) Joint (class in pyCGM2.Model.model) JointCalibrationMethod (class in pyCGM2.enums) JointPatternFilter (class in pyCGM2.Processing.JointPatterns.jointPatternFilters) JointPatternProcedure (class in pyCGM2.Processing.JointPatterns.jointPatternProcedures) JointPowerFilter (class in pyCGM2.Model.modelFilters) K Kad (class in pyCGM2.Model.modelDecorator) KAD (pyCGM2.enums.JointCalibrationMethod attribute) keepAndDeleteOtherPoints() (in module pyCGM2.Tools.btkTools) Kinematic (pyCGM2.enums.AnalysisSection attribute) kinematicInfo (pyCGM2.Processing.analysis.Analysis attribute) KinematicsPlotComparisonViewer (class in pyCGM2.Report.Viewers.comparisonPlotViewers) kinematicStats (pyCGM2.Processing.analysis.Analysis attribute) Kinetic (pyCGM2.enums.AnalysisSection attribute) kineticInfo (pyCGM2.Processing.analysis.Analysis attribute) KineticsPlotComparisonViewer (class in pyCGM2.Report.Viewers.comparisonPlotViewers) kineticStats (pyCGM2.Processing.analysis.Analysis attribute) KneeCalibrationDecorator (class in pyCGM2.Model.modelDecorator) L label (pyCGM2.Model.model.TechnicalReferential attribute) (pyCGM2.Nexus.Devices.Channel attribute) Left (pyCGM2.enums.SegmentSide attribute) LegLength (pyCGM2.enums.HarringtonPredictor attribute) LineLineIntersect() (in module pyCGM2.Math.geometry) loadAnalysis() (in module pyCGM2.Utils.files) loadEmg() (in module pyCGM2.Lib.emg) loadModel() (in module pyCGM2.Utils.files) loadModelSettings() (in module pyCGM2.Utils.files) loadMp() (in module pyCGM2.Utils.files) loadSettings() (in module pyCGM2.Utils.files) LowerLimb (pyCGM2.enums.BodyPart attribute) (pyCGM2.enums.BodyPartPlot attribute) LOWERLIMB_JOINTS (pyCGM2.Model.CGM2.cgm2.CGM2_4 attribute) LOWERLIMB_SEGMENTS (pyCGM2.Model.CGM2.cgm2.CGM2_4 attribute) LOWERLIMB_TRACKING_MARKERS (pyCGM2.Model.CGM2.cgm2.CGM2_3 attribute) (pyCGM2.Model.CGM2.cgm2.CGM2_4 attribute) LowerLimbTrunk (pyCGM2.enums.BodyPart attribute) M m_analysis (pyCGM2.Processing.Representative.representativeFilters.RepresentativeCycleFilter attribute) m_anomalyIndexes (pyCGM2.Anomaly.anomalyCorrectionProcedures.MarkerAnomalyCorrectionProcedure attribute) m_aqui (pyCGM2.Model.modelFilters.ModelJCSFilter attribute) m_config (pyCGM2.Nexus.eclipse.EnfReader attribute) m_file (pyCGM2.Nexus.eclipse.EnfReader attribute) m_fileName (pyCGM2.Report.plotFilters.PlottingFilter attribute) m_fixEuler (pyCGM2.Model.modelFilters.ModelJCSFilter attribute) m_format (pyCGM2.Report.plotFilters.PlottingFilter attribute) m_markers (pyCGM2.Anomaly.anomalyCorrectionProcedures.MarkerAnomalyCorrectionProcedure attribute) (pyCGM2.Anomaly.anomalyDetectionProcedures.MarkerAnomalyDetectionRollingProcedure attribute) m_model (pyCGM2.Model.modelFilters.ModelJCSFilter attribute) m_path (pyCGM2.Nexus.eclipse.EnfReader attribute) (pyCGM2.Report.plotFilters.PlottingFilter attribute) m_procedure (pyCGM2.Processing.Representative.representativeFilters.RepresentativeCycleFilter attribute) m_staticIkTargets (pyCGM2.Model.CGM2.cgm2.CGM2_2 attribute) (pyCGM2.Model.CGM2.cgm2.CGM2_3 attribute) m_title (pyCGM2.Report.plotFilters.PlottingFilter attribute) makeAnalysis() (in module pyCGM2.Lib.analysis) Marker (pyCGM2.enums.DataType attribute) MarkerAnomalyCorrectionProcedure (class in pyCGM2.Anomaly.anomalyCorrectionProcedures) MarkerAnomalyDetectionRollingProcedure (class in pyCGM2.Anomaly.anomalyDetectionProcedures) markerFiltering() (in module pyCGM2.Signal.signal_processing) MarkerPresenceDetectionProcedure (class in pyCGM2.Inspector.inspectorProcedures) markersToArray() (in module pyCGM2.Tools.btkTools) markerUnitConverter() (in module pyCGM2.Tools.btkTools) matchingFootSideOnForceplate() (in module pyCGM2.ForcePlates.forceplates) matrixFirstDerivation() (in module pyCGM2.Math.derivation) matrixSecondDerivation() (in module pyCGM2.Math.derivation) MaxMax (pyCGM2.enums.EmgAmplitudeNormalization attribute) MaxMinProcedure (class in pyCGM2.Processing.DiscretePoints.discretePointProcedures) MeanMax (pyCGM2.enums.EmgAmplitudeNormalization attribute) meanPlot() (in module pyCGM2.Report.plot) Medial (pyCGM2.enums.JointCalibrationMethod attribute) MedianMax (pyCGM2.enums.EmgAmplitudeNormalization attribute) midCondyles() (pyCGM2.Model.modelDecorator.KneeCalibrationDecorator method) midCondyles_KAD() (pyCGM2.Model.modelDecorator.KneeCalibrationDecorator method) midMaleolus() (pyCGM2.Model.modelDecorator.AnkleCalibrationDecorator method) midPoint() (in module pyCGM2.Model.modelDecorator) Model (class in pyCGM2.Model.model) Model6Dof (class in pyCGM2.Model.model) ModelAbsoluteAnglesFilter (class in pyCGM2.Model.modelFilters) ModelCalibrationFilter (class in pyCGM2.Model.modelFilters) ModelCoordinateSystemProcedure (class in pyCGM2.Model.modelFilters) ModelCorrectionProcedure (class in pyCGM2.Model.Procedures.modelMotionCorrection) modelInfo (pyCGM2.Processing.analysis.Analysis attribute) ModelJCSFilter (class in pyCGM2.Model.modelFilters) ModelMotionCorrectionFilter (class in pyCGM2.Model.modelFilters) ModelMotionFilter (class in pyCGM2.Model.modelFilters) ModelQualityFilter (class in pyCGM2.Model.modelFilters) ModelScoreResidualProcedure (class in pyCGM2.Model.Procedures.modelQuality) modifyEventSubject() (in module pyCGM2.Tools.btkTools) modifySubject() (in module pyCGM2.Tools.btkTools) Moment (pyCGM2.enums.DataType attribute) MomentProjection (class in pyCGM2.enums) mot2pointValues() (in module pyCGM2.Tools.opensimTools) motion (pyCGM2.Model.model.Referential attribute) motionMethod (class in pyCGM2.enums) mp (pyCGM2.Anomaly.anomalyDetectionProcedures.AnthropoDataAnomalyProcedure attribute) MultipleAnalysis_EnvEmgPlotPanelViewer (class in pyCGM2.Report.Viewers.emgPlotViewers) muscleDynamicInfo (pyCGM2.Processing.analysis.Analysis attribute) muscleDynamicStats (pyCGM2.Processing.analysis.Analysis attribute) muscleGeometryInfo (pyCGM2.Processing.analysis.Analysis attribute) muscleGeometryStats (pyCGM2.Processing.analysis.Analysis attribute) MuscleNormalizedPlotPanelViewer (class in pyCGM2.Report.Viewers.musclePlotViewers) N Naim2019ThighMisaligmentCorrectionProcedure (class in pyCGM2.Model.Procedures.modelMotionCorrection) NAME (pyCGM2.EMG.discreteEmgProcedures.AmplitudesProcedure attribute) Native (pyCGM2.enums.HarringtonPredictor attribute) NEXUS (pyCGM2.Nexus.Devices.Device attribute) NexusConstructAcquisitionFilter (class in pyCGM2.Nexus.nexusFilters) NexusModelFilter (class in pyCGM2.Nexus.nexusFilters) Node (class in pyCGM2.Model.frame) normalizedEMG() (in module pyCGM2.Lib.emg) NormalizedGaitGrfIntegrationPlotViewer (class in pyCGM2.Report.Viewers.groundReactionPlotViewers) NormalizedGaitMeanGrfIntegrationPlotViewer (class in pyCGM2.Report.Viewers.groundReactionPlotViewers) NormalizedGroundReactionForcePlotViewer (class in pyCGM2.Report.Viewers.groundReactionPlotViewers) NormalizedKinematicsPlotViewer (class in pyCGM2.Report.Viewers.plotViewers) NormalizedKineticsPlotViewer (class in pyCGM2.Report.Viewers.plotViewers) normalizedMuscleLength_withPose() (in module pyCGM2.Processing.analysisHandler) NormalSTP (class in pyCGM2.Report.normativeDatasets) NormativeData (class in pyCGM2.Report.normativeDatasets) O openFile() (in module pyCGM2.Utils.files) openJson() (in module pyCGM2.Utils.files) openPickleFile() (in module pyCGM2.Utils.files) opensenseInterfaceImuInverseKinematicFilter (class in pyCGM2.IMU.opensense.interface.opensenseFilters) opensenseInterfaceImuPlacerFilter (class in pyCGM2.IMU.opensense.interface.opensenseFilters) opensimGeometry() (pyCGM2.Model.CGM2.cgm.CGM1 method) (pyCGM2.Model.CGM2.cgm2.CGM2_4 method) opensimIkTask() (pyCGM2.Model.CGM2.cgm.CGM1 method) (pyCGM2.Model.CGM2.cgm2.CGM2_3 method) (pyCGM2.Model.CGM2.cgm2.CGM2_4 method) opensimInterfaceAnalysesFilter (class in pyCGM2.Model.Opensim.interface.opensimInterfaceFilters) opensimInterfaceInverseDynamicsFilter (class in pyCGM2.Model.Opensim.interface.opensimInterfaceFilters) opensimInterfaceInverseKinematicsFilter (class in pyCGM2.Model.Opensim.interface.opensimInterfaceFilters) opensimInterfaceScalingFilter (class in pyCGM2.Model.Opensim.interface.opensimInterfaceFilters) opensimInterfaceStaticOptimizationFilter (class in pyCGM2.Model.Opensim.interface.opensimInterfaceFilters) opensimTrackingMarkers() (pyCGM2.Model.CGM2.cgm.CGM1 method) opensimXmlInterface (class in pyCGM2.Model.Opensim.interface.opensimInterface) openYaml() (in module pyCGM2.Utils.files) oppositeVector() (in module pyCGM2.Math.geometry) optionalData (pyCGM2.Processing.analysis.AnalysisStructure attribute) osimCgmInterface (class in pyCGM2.Model.Opensim.interface.opensimInterface) osimInterface (class in pyCGM2.Model.Opensim.interface.opensimInterface) P Patient (pyCGM2.enums.EclipseType attribute) PatientEnfReader (class in pyCGM2.Nexus.eclipse) pdfGaitReport() (in module pyCGM2.Lib.report) PelvisProgressionFrameProcedure (class in pyCGM2.Processing.ProgressionFrame.progressionFrameProcedures) PelvisWidth (pyCGM2.enums.HarringtonPredictor attribute) PFKEprocedure (class in pyCGM2.Processing.Classification.classificationProcedures) plot() (pyCGM2.Processing.Classification.classificationProcedures.PFKEprocedure method) (pyCGM2.Report.plotFilters.PlottingFilter method) plot_ConsistencyKinematic() (in module pyCGM2.Lib.plot) plot_ConsistencyKinetic() (in module pyCGM2.Lib.plot) plot_DescriptiveGRF() (in module pyCGM2.Lib.plot) plot_DescriptiveGrfIntegration() (in module pyCGM2.Lib.plot) plot_DescriptiveKinematic() (in module pyCGM2.Lib.plot) plot_DescriptiveKinetic() (in module pyCGM2.Lib.plot) plot_DescriptiveMuscleLength() (in module pyCGM2.Lib.plot) plot_MAP() (in module pyCGM2.Lib.plot) plot_spatioTemporal() (in module pyCGM2.Lib.plot) plotConsistencyEnvelopEMGpanel() (in module pyCGM2.Lib.plot) plotDescriptiveEnvelopEMGpanel() (in module pyCGM2.Lib.plot) plotPanel() (pyCGM2.Report.Viewers.comparisonPlotViewers.KinematicsPlotComparisonViewer method) (pyCGM2.Report.Viewers.comparisonPlotViewers.KineticsPlotComparisonViewer method) (pyCGM2.Report.Viewers.customPlotViewers.SaggitalGagePlotViewer method) (pyCGM2.Report.Viewers.emgPlotViewers.CoactivationEmgPlotViewer method) (pyCGM2.Report.Viewers.emgPlotViewers.EnvEmgGaitPlotPanelViewer method) (pyCGM2.Report.Viewers.emgPlotViewers.MultipleAnalysis_EnvEmgPlotPanelViewer method) (pyCGM2.Report.Viewers.emgPlotViewers.TemporalEmgPlotViewer method) (pyCGM2.Report.Viewers.groundReactionPlotViewers.NormalizedGaitGrfIntegrationPlotViewer method) (pyCGM2.Report.Viewers.groundReactionPlotViewers.NormalizedGaitMeanGrfIntegrationPlotViewer method) (pyCGM2.Report.Viewers.groundReactionPlotViewers.NormalizedGroundReactionForcePlotViewer method) (pyCGM2.Report.Viewers.musclePlotViewers.MuscleNormalizedPlotPanelViewer method) (pyCGM2.Report.Viewers.plotViewers.GpsMapPlotViewer method) (pyCGM2.Report.Viewers.plotViewers.NormalizedKinematicsPlotViewer method) (pyCGM2.Report.Viewers.plotViewers.NormalizedKineticsPlotViewer method) (pyCGM2.Report.Viewers.plotViewers.PlotViewer method) (pyCGM2.Report.Viewers.plotViewers.SpatioTemporalPlotViewer method) (pyCGM2.Report.Viewers.plotViewers.TemporalKinematicsPlotViewer method) (pyCGM2.Report.Viewers.plotViewers.TemporalKineticsPlotViewer method) plotPFKE() (in module pyCGM2.Lib.plot) plotSaggitalGagePanel() (in module pyCGM2.Lib.plot) plotTemporalEMG() (in module pyCGM2.Lib.plot) plotTemporalKinematic() (in module pyCGM2.Lib.plot) plotTemporalKinetic() (in module pyCGM2.Lib.plot) PlottingFilter (class in pyCGM2.Report.plotFilters) PlotViewer (class in pyCGM2.Report.Viewers.plotViewers) point_descriptiveStats() (in module pyCGM2.Processing.cycle) PointProgressionFrameProcedure (class in pyCGM2.Processing.ProgressionFrame.progressionFrameProcedures) Power (pyCGM2.enums.DataType attribute) prepareBaseImu() (pyCGM2.IMU.opensense.interface.procedures.opensenseImuPlacerInterfaceProcedure.ImuPlacerXMLProcedure method) prepareImu() (pyCGM2.IMU.opensense.interface.procedures.opensenseImuKinematicFitterProcedure.ImuInverseKinematicXMLProcedure method) (pyCGM2.IMU.opensense.interface.procedures.opensenseImuPlacerInterfaceProcedure.ImuPlacerXMLProcedure method) prepareImuMapper() (pyCGM2.IMU.opensense.interface.procedures.opensenseImuKinematicFitterProcedure.ImuInverseKinematicXMLProcedure method) (pyCGM2.IMU.opensense.interface.procedures.opensenseImuPlacerInterfaceProcedure.ImuPlacerXMLProcedure method) prepareOrientationFile() (pyCGM2.IMU.opensense.interface.procedures.opensenseImuKinematicFitterProcedure.ImuInverseKinematicXMLProcedure method) (pyCGM2.IMU.opensense.interface.procedures.opensenseImuPlacerInterfaceProcedure.ImuPlacerXMLProcedure method) prepareSensorToOpensimRotation() (pyCGM2.IMU.opensense.interface.procedures.opensenseImuKinematicFitterProcedure.ImuInverseKinematicXMLProcedure method) (pyCGM2.IMU.opensense.interface.procedures.opensenseImuPlacerInterfaceProcedure.ImuPlacerXMLProcedure method) prepareStaticTrial_fromBtkAcq() (pyCGM2.Model.Opensim.interface.procedures.scaling.opensimScalingInterfaceProcedure.ScalingXmlProcedure method) prepareTrial_fromBtkAcq() (pyCGM2.Model.Opensim.interface.procedures.analysisReport.opensimAnalysesInterfaceProcedure.AnalysesXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.inverseDynamics.opensimInverseDynamicsInterfaceProcedure.InverseDynamicsXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.inverseKinematics.opensimInverseKinematicsInterfaceProcedure.InverseKinematicXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.staticOptimisation.opensimStaticOptimizationInterfaceProcedure.StaticOptimisationXmlProcedure method) prepareTrial_fromMotFiles() (pyCGM2.Model.Opensim.interface.procedures.analysisReport.opensimAnalysesInterfaceProcedure.AnalysesXmlProcedure method) prepareWeights() (pyCGM2.Model.Opensim.interface.procedures.inverseKinematics.opensimInverseKinematicsInterfaceProcedure.InverseKinematicXmlProcedure method) prepareXml() (pyCGM2.IMU.opensense.interface.procedures.opensenseImuKinematicFitterProcedure.ImuInverseKinematicXMLProcedure method) (pyCGM2.IMU.opensense.interface.procedures.opensenseImuPlacerInterfaceProcedure.ImuPlacerXMLProcedure method) (pyCGM2.Model.Opensim.interface.procedures.analysisReport.opensimAnalysesInterfaceProcedure.AnalysesXmlCgmDrivenModelProcedure method) (pyCGM2.Model.Opensim.interface.procedures.analysisReport.opensimAnalysesInterfaceProcedure.AnalysesXmlCgmProcedure method) (pyCGM2.Model.Opensim.interface.procedures.analysisReport.opensimAnalysesInterfaceProcedure.AnalysesXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.inverseDynamics.opensimInverseDynamicsInterfaceProcedure.InverseDynamicsXmlCgmProcedure method) (pyCGM2.Model.Opensim.interface.procedures.inverseDynamics.opensimInverseDynamicsInterfaceProcedure.InverseDynamicsXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.inverseKinematics.opensimInverseKinematicsInterfaceProcedure.InverseKinematicXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.scaling.opensimScalingInterfaceProcedure.ScalingXmlCgmProcedure method) (pyCGM2.Model.Opensim.interface.procedures.scaling.opensimScalingInterfaceProcedure.ScalingXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.staticOptimisation.opensimStaticOptimizationInterfaceProcedure.StaticOptimisationXmlCgmProcedure method) (pyCGM2.Model.Opensim.interface.procedures.staticOptimisation.opensimStaticOptimizationInterfaceProcedure.StaticOptimisationXmlProcedure method) processAnalysis() (pyCGM2.EMG.emgFilters.EmgNormalisationProcessingFilter method) processC3d() (pyCGM2.EMG.emgFilters.EmgNormalisationProcessingFilter method) processEMG() (in module pyCGM2.Lib.emg) processEMG_fromBtkAcq() (in module pyCGM2.Lib.emg) ProgressionFrameFilter (class in pyCGM2.Processing.ProgressionFrame.progressionFrameFilters) ProgressionFrameProcedure (class in pyCGM2.Processing.ProgressionFrame.progressionFrameProcedures) Proximal (pyCGM2.enums.MomentProjection attribute) pst (pyCGM2.Processing.analysis.AnalysisStructure attribute) pushFittedMarkersIntoAcquisition() (pyCGM2.Model.Opensim.interface.opensimInterfaceFilters.opensimInterfaceInverseKinematicsFilter method) pushMotToAcq() (pyCGM2.Model.Opensim.interface.opensimInterfaceFilters.opensimInterfaceInverseKinematicsFilter method) pushStoToAcq() (pyCGM2.Model.Opensim.interface.opensimInterfaceFilters.opensimInterfaceAnalysesFilter method) (pyCGM2.Model.Opensim.interface.opensimInterfaceFilters.opensimInterfaceInverseDynamicsFilter method) (pyCGM2.Model.Opensim.interface.opensimInterfaceFilters.opensimInterfaceStaticOptimizationFilter method) Q QualityProcedure (class in pyCGM2.Model.Procedures.modelQuality) quaternion_TO_angleAxis() (in module pyCGM2.Model.frame) quaternion_TO_rotationMatrix() (in module pyCGM2.Model.frame) QuaternionMotionProcedure (class in pyCGM2.IMU.Procedures.imuMotionProcedure) R read() (pyCGM2.IMU.Procedures.imuReaderProcedures.C3dBlueTridentProcedure method) (pyCGM2.IMU.Procedures.imuReaderProcedures.CsvProcedure method) (pyCGM2.IMU.Procedures.imuReaderProcedures.DataframeProcedure method) readContent() (in module pyCGM2.Utils.files) readXml() (in module pyCGM2.Utils.files) RealignedMotionProcedure (class in pyCGM2.IMU.Procedures.imuMotionProcedure) rectify() (in module pyCGM2.Signal.signal_processing) Referential (class in pyCGM2.Model.model) reInit() (pyCGM2.IMU.imu.Imu method) RelativeAnglesProcedure (class in pyCGM2.IMU.Procedures.relativeImuAngleProcedures) relativeMatrixAnatomic (pyCGM2.Model.model.Referential attribute) (pyCGM2.Model.model.TechnicalReferential attribute) remove50hz() (in module pyCGM2.Signal.signal_processing) removeJoint() (pyCGM2.Model.model.Model method) removeSegment() (pyCGM2.Model.model.Model method) removeTrackingMarker() (pyCGM2.Model.model.Segment method) renameEvent() (in module pyCGM2.Tools.btkTools) renameFile() (in module pyCGM2.Utils.files) RepresentativeCycleFilter (class in pyCGM2.Processing.Representative.representativeFilters) RepresentativeProcedure (class in pyCGM2.Processing.Representative.representativeProcedures) resetMarkerLabels() (pyCGM2.Model.model.Segment method) Right (pyCGM2.enums.SegmentSide attribute) rms() (in module pyCGM2.Math.numeric) rotationMatrix_TO_angleAxis() (in module pyCGM2.Model.frame) rotationMatrix_TO_quaternion() (in module pyCGM2.Model.frame) run() (pyCGM2.Anomaly.anomalyCorrectionProcedures.MarkerAnomalyCorrectionProcedure method) (pyCGM2.Anomaly.anomalyDetectionProcedures.AnomalyDetectionProcedure method) (pyCGM2.Anomaly.anomalyDetectionProcedures.AnthropoDataAnomalyProcedure method) (pyCGM2.Anomaly.anomalyDetectionProcedures.ForcePlateAnomalyProcedure method) (pyCGM2.Anomaly.anomalyDetectionProcedures.GaitEventAnomalyProcedure method) (pyCGM2.Anomaly.anomalyDetectionProcedures.MarkerAnomalyDetectionRollingProcedure method) (pyCGM2.Anomaly.anomalyFilters.AnomalyCorrectionFilter method) (pyCGM2.Anomaly.anomalyFilters.AnomalyDetectionFilter method) (pyCGM2.EMG.coactivationProcedures.FalconerCoActivationProcedure method) (pyCGM2.EMG.coactivationProcedures.UnithanCoActivationProcedure method) (pyCGM2.EMG.emgFilters.BasicEmgProcessingFilter method) (pyCGM2.EMG.emgFilters.EmgCoActivationFilter method) (pyCGM2.EMG.emgFilters.EmgEnvelopProcessingFilter method) (pyCGM2.EMG.emgFilters.EmgNormalisationProcessingFilter method) (pyCGM2.IMU.imuFilters.ImuReaderFilter method) (pyCGM2.IMU.opensense.interface.opensenseFilters.opensenseInterfaceImuInverseKinematicFilter method) (pyCGM2.IMU.opensense.interface.opensenseFilters.opensenseInterfaceImuPlacerFilter method) (pyCGM2.IMU.opensense.interface.procedures.opensenseImuKinematicFitterProcedure.ImuInverseKinematicXMLProcedure method) (pyCGM2.IMU.opensense.interface.procedures.opensenseImuPlacerInterfaceProcedure.ImuPlacerXMLProcedure method) (pyCGM2.Inspector.inspectorFilters.InspectorFilter method) (pyCGM2.Inspector.inspectorProcedures.MarkerPresenceDetectionProcedure method) (pyCGM2.Model.modelFilters.ModelQualityFilter method) (pyCGM2.Model.Opensim.interface.opensimInterfaceFilters.opensimInterfaceAnalysesFilter method) (pyCGM2.Model.Opensim.interface.opensimInterfaceFilters.opensimInterfaceInverseDynamicsFilter method) (pyCGM2.Model.Opensim.interface.opensimInterfaceFilters.opensimInterfaceInverseKinematicsFilter method) (pyCGM2.Model.Opensim.interface.opensimInterfaceFilters.opensimInterfaceScalingFilter method) (pyCGM2.Model.Opensim.interface.opensimInterfaceFilters.opensimInterfaceStaticOptimizationFilter method) (pyCGM2.Model.Opensim.interface.procedures.analysisReport.opensimAnalysesInterfaceProcedure.AnalysesXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.inverseDynamics.opensimInverseDynamicsInterfaceProcedure.InverseDynamicsXmlCgmProcedure method) (pyCGM2.Model.Opensim.interface.procedures.inverseDynamics.opensimInverseDynamicsInterfaceProcedure.InverseDynamicsXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.inverseKinematics.opensimInverseKinematicsInterfaceProcedure.InverseKinematicXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.scaling.opensimScalingInterfaceProcedure.ScalingXmlCgmProcedure method) (pyCGM2.Model.Opensim.interface.procedures.scaling.opensimScalingInterfaceProcedure.ScalingXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.staticOptimisation.opensimStaticOptimizationInterfaceProcedure.StaticOptimisationXmlProcedure method) (pyCGM2.Model.Procedures.modelQuality.WandAngleQualityProcedure method) (pyCGM2.Nexus.nexusFilters.NexusModelFilter method) (pyCGM2.Processing.Classification.classificationFilters.ClassificationFilter method) (pyCGM2.Processing.Classification.classificationProcedures.PFKEprocedure method) (pyCGM2.Processing.Representative.representativeFilters.RepresentativeCycleFilter method) S SaggitalGagePlotViewer (class in pyCGM2.Report.Viewers.customPlotViewers) Sangeux2015Procedure (class in pyCGM2.Processing.Representative.representativeProcedures) sara() (in module pyCGM2.Lib.CGM.kneeCalibration) (pyCGM2.Model.modelDecorator.KneeCalibrationDecorator method) saraCalibration() (in module pyCGM2.Model.modelDecorator) save() (pyCGM2.Nexus.eclipse.PatientEnfReader method) (pyCGM2.Nexus.eclipse.SessionEnfReader method) (pyCGM2.Nexus.eclipse.TrialEnfReader method) saveAnalysis() (in module pyCGM2.Utils.files) saveJson() (in module pyCGM2.Utils.files) saveModel() (in module pyCGM2.Utils.files) saveMp() (in module pyCGM2.Utils.files) savePickleFile() (in module pyCGM2.Utils.files) saveYaml() (in module pyCGM2.Utils.files) ScalingXmlCgmProcedure (class in pyCGM2.Model.Opensim.interface.procedures.scaling.opensimScalingInterfaceProcedure) ScalingXmlProcedure (class in pyCGM2.Model.Opensim.interface.procedures.scaling.opensimScalingInterfaceProcedure) ScoreFilter (class in pyCGM2.Processing.Scores.scoreFilters) scoreInfo (pyCGM2.Processing.analysis.Analysis attribute) ScoreProcedure (class in pyCGM2.Processing.Scores.scoreProcedures) Segment (class in pyCGM2.Model.model) (pyCGM2.enums.DataType attribute) segmentalCompute() (pyCGM2.Model.modelFilters.ModelMotionFilter method) SegmentSide (class in pyCGM2.enums) selectEmgChannels() (pyCGM2.Report.Viewers.emgPlotViewers.EnvEmgGaitPlotPanelViewer method) (pyCGM2.Report.Viewers.emgPlotViewers.MultipleAnalysis_EnvEmgPlotPanelViewer method) (pyCGM2.Report.Viewers.emgPlotViewers.TemporalEmgPlotViewer method) Session (pyCGM2.enums.EclipseType attribute) SessionEnfReader (class in pyCGM2.Nexus.eclipse) set() (pyCGM2.Nexus.eclipse.PatientEnfReader method) (pyCGM2.Nexus.eclipse.SessionEnfReader method) (pyCGM2.Nexus.eclipse.TrialEnfReader method) set_inList_fromAttr() (pyCGM2.Model.Opensim.interface.opensimInterface.opensimXmlInterface method) set_many() (pyCGM2.Model.Opensim.interface.opensimInterface.opensimXmlInterface method) set_many_inList() (pyCGM2.Model.Opensim.interface.opensimInterface.opensimXmlInterface method) set_one() (pyCGM2.Model.Opensim.interface.opensimInterface.opensimXmlInterface method) setAccuracy() (pyCGM2.Model.Opensim.interface.procedures.inverseKinematics.opensimInverseKinematicsInterfaceProcedure.InverseKinematicXmlProcedure method) setAnalysisInstance() (pyCGM2.Processing.exporter.AnalysisExportFilter method) (pyCGM2.Processing.exporter.XlsAnalysisExportFilter method) setAnatomicalDefinition() (pyCGM2.Model.modelFilters.GeneralCalibrationProcedure method) setAutomaticYlimits() (pyCGM2.Report.plotFilters.PlottingFilter method) (pyCGM2.Report.Viewers.plotViewers.PlotViewer method) setAxes() (pyCGM2.Model.frame.Frame method) setBodyPart() (pyCGM2.Model.model.Model method) setBoolOption() (pyCGM2.Model.modelFilters.ModelCalibrationFilter method) (pyCGM2.Model.modelFilters.ModelMotionFilter method) setBuilder() (pyCGM2.Processing.analysis.AnalysisFilter method) (pyCGM2.Processing.cycle.CyclesFilter method) setC3ds() (pyCGM2.EMG.emgFilters.EmgNormalisationProcessingFilter method) setCalibrationProperty() (pyCGM2.Model.model.Model method) setCentreOfMass() (pyCGM2.Model.model.Model method) setClinicalDescriptor() (pyCGM2.Model.model.Model method) setCoactivation() (pyCGM2.Processing.analysis.Analysis method) setCoactivationMethod() (pyCGM2.EMG.emgFilters.EmgCoActivationFilter method) setComPosition() (pyCGM2.Model.model.Segment method) setConcretePlotFunction() (pyCGM2.Report.Viewers.comparisonPlotViewers.KinematicsPlotComparisonViewer method) (pyCGM2.Report.Viewers.comparisonPlotViewers.KineticsPlotComparisonViewer method) (pyCGM2.Report.Viewers.emgPlotViewers.CoactivationEmgPlotViewer method) (pyCGM2.Report.Viewers.emgPlotViewers.EnvEmgGaitPlotPanelViewer method) (pyCGM2.Report.Viewers.emgPlotViewers.MultipleAnalysis_EnvEmgPlotPanelViewer method) (pyCGM2.Report.Viewers.groundReactionPlotViewers.NormalizedGaitGrfIntegrationPlotViewer method) (pyCGM2.Report.Viewers.groundReactionPlotViewers.NormalizedGroundReactionForcePlotViewer method) (pyCGM2.Report.Viewers.musclePlotViewers.MuscleNormalizedPlotPanelViewer method) (pyCGM2.Report.Viewers.plotViewers.NormalizedKinematicsPlotViewer method) (pyCGM2.Report.Viewers.plotViewers.NormalizedKineticsPlotViewer method) setCondExpInf() (pyCGM2.EMG.emgFilters.DiscreteEMGFilter method) (pyCGM2.Processing.DiscretePoints.discretePointFilters.DiscretePointsFilter method) setContext() (pyCGM2.Report.Viewers.emgPlotViewers.CoactivationEmgPlotViewer method) setCoordinateSystemDefinition() (pyCGM2.Model.model.Model method) setCutoffFrequency() (pyCGM2.EMG.emgFilters.EmgEnvelopProcessingFilter method) setData() (pyCGM2.Processing.Representative.representativeProcedures.Sangeux2015Procedure method) setDataFrames() (pyCGM2.Processing.exporter.XlsExportDataFrameFilter method) setDefaultData() (pyCGM2.Processing.Representative.representativeProcedures.Sangeux2015Procedure method) setDefinition() (pyCGM2.Model.modelFilters.GeneralCalibrationProcedure method) (pyCGM2.Model.modelFilters.GeneralCoordinateSystemProcedure method) (pyCGM2.Model.Procedures.modelQuality.GeneralScoreResidualProcedure method) setDescription() (pyCGM2.Model.frame.Node method) setEmg() (pyCGM2.Processing.analysis.Analysis method) setEMG1() (pyCGM2.EMG.emgFilters.EmgCoActivationFilter method) setEMG2() (pyCGM2.EMG.emgFilters.EmgCoActivationFilter method) setEmgInfo() (pyCGM2.Processing.analysis.Analysis method) setEmgManager() (pyCGM2.Report.Viewers.emgPlotViewers.EnvEmgGaitPlotPanelViewer method) (pyCGM2.Report.Viewers.emgPlotViewers.MultipleAnalysis_EnvEmgPlotPanelViewer method) (pyCGM2.Report.Viewers.emgPlotViewers.TemporalEmgPlotViewer method) setEmgRectify() (pyCGM2.Report.Viewers.emgPlotViewers.TemporalEmgPlotViewer method) setEmgs() (pyCGM2.Report.Viewers.emgPlotViewers.CoactivationEmgPlotViewer method) setEnableFlag() (pyCGM2.Processing.cycle.Cycle method) setExistFrames() (pyCGM2.Model.model.Segment method) setExperimentalInfo() (pyCGM2.Processing.analysis.Analysis method) setExport() (pyCGM2.Report.plotFilters.PlottingFilter method) setFixEuler() (pyCGM2.Model.modelFilters.ModelJCSFilter method) setFootOffOffset() (pyCGM2.Events.eventProcedures.ZeniProcedure method) setFootStrikeOffset() (pyCGM2.Events.eventProcedures.ZeniProcedure method) setForcePlates() (pyCGM2.Nexus.eclipse.TrialEnfReader method) setFrameData() (in module pyCGM2.Model.frame) setFrameRange() (pyCGM2.Model.Opensim.interface.procedures.analysisReport.opensimAnalysesInterfaceProcedure.AnalysesXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.inverseDynamics.opensimInverseDynamicsInterfaceProcedure.InverseDynamicsXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.inverseKinematics.opensimInverseKinematicsInterfaceProcedure.InverseKinematicXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.staticOptimisation.opensimStaticOptimizationInterfaceProcedure.StaticOptimisationXmlProcedure method) setGps() (pyCGM2.Processing.analysis.Analysis method) setGvs() (pyCGM2.Processing.analysis.Analysis method) setHighPassFrequencies() (pyCGM2.EMG.emgFilters.BasicEmgProcessingFilter method) setHorizontalLines() (pyCGM2.Report.plotFilters.PlottingFilter method) setInertiaTensor() (pyCGM2.Model.model.Segment method) setInfo() (pyCGM2.Processing.analysis.AnalysisFilter method) setKinematic() (pyCGM2.Processing.analysis.Analysis method) setKinematicInfo() (pyCGM2.Processing.analysis.Analysis method) setKinetic() (pyCGM2.Processing.analysis.Analysis method) setKineticInfo() (pyCGM2.Processing.analysis.Analysis method) setLength() (pyCGM2.Model.model.Segment method) setMass() (pyCGM2.Model.model.Segment method) setMaxMethod() (pyCGM2.EMG.emgFilters.EmgNormalisationProcessingFilter method) setModelInfo() (pyCGM2.Processing.analysis.Analysis method) (pyCGM2.Processing.DiscretePoints.discretePointFilters.DiscretePointsFilter method) setMuscleDynamicInfo() (pyCGM2.Processing.analysis.Analysis method) setMuscleGeometry() (pyCGM2.Processing.analysis.Analysis method) setMuscleGeometryInfo() (pyCGM2.Processing.analysis.Analysis method) setMuscleOutputType() (pyCGM2.Report.Viewers.musclePlotViewers.MuscleNormalizedPlotPanelViewer method) setMuscles() (pyCGM2.Report.Viewers.emgPlotViewers.CoactivationEmgPlotViewer method) (pyCGM2.Report.Viewers.musclePlotViewers.MuscleNormalizedPlotPanelViewer method) setNoAnatomicalCalibration() (pyCGM2.Model.modelFilters.ModelCalibrationFilter method) setNoAnatomicalMotion() (pyCGM2.Model.modelFilters.ModelMotionFilter method) setNormalizationSuffix() (pyCGM2.Report.Viewers.musclePlotViewers.MuscleNormalizedPlotPanelViewer method) setNormalizedEmgFlag() (pyCGM2.Report.Viewers.emgPlotViewers.EnvEmgGaitPlotPanelViewer method) (pyCGM2.Report.Viewers.emgPlotViewers.MultipleAnalysis_EnvEmgPlotPanelViewer method) setNormativeData() (pyCGM2.Report.Viewers.plotViewers.PlotViewer method) setNormativeDataset() (pyCGM2.Report.Viewers.comparisonPlotViewers.KinematicsPlotComparisonViewer method) (pyCGM2.Report.Viewers.comparisonPlotViewers.KineticsPlotComparisonViewer method) (pyCGM2.Report.Viewers.customPlotViewers.SaggitalGagePlotViewer method) (pyCGM2.Report.Viewers.emgPlotViewers.CoactivationEmgPlotViewer method) (pyCGM2.Report.Viewers.emgPlotViewers.EnvEmgGaitPlotPanelViewer method) (pyCGM2.Report.Viewers.emgPlotViewers.MultipleAnalysis_EnvEmgPlotPanelViewer method) (pyCGM2.Report.Viewers.emgPlotViewers.TemporalEmgPlotViewer method) (pyCGM2.Report.Viewers.groundReactionPlotViewers.NormalizedGaitGrfIntegrationPlotViewer method) (pyCGM2.Report.Viewers.groundReactionPlotViewers.NormalizedGaitMeanGrfIntegrationPlotViewer method) (pyCGM2.Report.Viewers.groundReactionPlotViewers.NormalizedGroundReactionForcePlotViewer method) (pyCGM2.Report.Viewers.musclePlotViewers.MuscleNormalizedPlotPanelViewer method) (pyCGM2.Report.Viewers.plotViewers.NormalizedKinematicsPlotViewer method) (pyCGM2.Report.Viewers.plotViewers.NormalizedKineticsPlotViewer method) (pyCGM2.Report.Viewers.plotViewers.SpatioTemporalPlotViewer method) setOption() (pyCGM2.Model.modelFilters.ModelCalibrationFilter method) (pyCGM2.Model.modelFilters.ModelMotionFilter method) setParameters() (pyCGM2.Model.bodySegmentParameters.Bsp class method) setPose() (pyCGM2.Model.Opensim.interface.procedures.analysisReport.opensimAnalysesInterfaceProcedure.AnalysesXmlCgmDrivenModelProcedure method) setProperty() (pyCGM2.Model.model.Model method) setRelativeMatrixAnatomic() (pyCGM2.Model.model.TechnicalReferential method) setResultsDirname() (pyCGM2.Model.Opensim.interface.procedures.staticOptimisation.opensimStaticOptimizationInterfaceProcedure.StaticOptimisationXmlProcedure method) setRog() (pyCGM2.Model.model.Segment method) setRotation() (pyCGM2.Model.frame.Frame method) setScoreInfo() (pyCGM2.Processing.analysis.Analysis method) setSetupFile() (pyCGM2.IMU.opensense.interface.procedures.opensenseImuKinematicFitterProcedure.ImuInverseKinematicXMLProcedure method) (pyCGM2.IMU.opensense.interface.procedures.opensenseImuPlacerInterfaceProcedure.ImuPlacerXMLProcedure method) (pyCGM2.Model.Opensim.interface.procedures.inverseKinematics.opensimInverseKinematicsInterfaceProcedure.InverseKinematicXmlProcedure method) setSetupFiles() (pyCGM2.Model.Opensim.interface.procedures.analysisReport.opensimAnalysesInterfaceProcedure.AnalysesXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.inverseDynamics.opensimInverseDynamicsInterfaceProcedure.InverseDynamicsXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.scaling.opensimScalingInterfaceProcedure.ScalingXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.staticOptimisation.opensimStaticOptimizationInterfaceProcedure.StaticOptimisationXmlProcedure method) setSTAexpertMode() (pyCGM2.Model.CGM2.cgm.CGM method) setStatic() (pyCGM2.Model.modelFilters.CoordinateSystemDisplayFilter method) setStaticFilename() (pyCGM2.Model.model.Model method) setStaticFrame() (pyCGM2.Model.model.Referential method) setStaticIkTargets() (pyCGM2.Model.CGM2.cgm2.CGM2_2 method) (pyCGM2.Model.CGM2.cgm2.CGM2_3 method) setStaticTrackingMarkers() (pyCGM2.Model.CGM2.cgm.CGM method) setStp() (pyCGM2.Processing.analysis.Analysis method) setStpInfo() (pyCGM2.Processing.analysis.Analysis method) setSubjectInfo() (pyCGM2.Processing.analysis.Analysis method) setSubjInfo() (pyCGM2.EMG.emgFilters.DiscreteEMGFilter method) (pyCGM2.Processing.DiscretePoints.discretePointFilters.DiscretePointsFilter method) setThresholdFromOtherAnalysis() (pyCGM2.EMG.emgFilters.EmgNormalisationProcessingFilter method) setTimeRange() (pyCGM2.IMU.opensense.interface.procedures.opensenseImuKinematicFitterProcedure.ImuInverseKinematicXMLProcedure method) (pyCGM2.Model.Opensim.interface.procedures.analysisReport.opensimAnalysesInterfaceProcedure.AnalysesXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.inverseDynamics.opensimInverseDynamicsInterfaceProcedure.InverseDynamicsXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.inverseKinematics.opensimInverseKinematicsInterfaceProcedure.InverseKinematicXmlProcedure method) (pyCGM2.Model.Opensim.interface.procedures.staticOptimisation.opensimStaticOptimizationInterfaceProcedure.StaticOptimisationXmlProcedure method) setTitle() (pyCGM2.Report.plotFilters.PlottingFilter method) setTrajectoryFromAcq() (in module pyCGM2.Nexus.nexusTools) setTrajectoryFromArray() (in module pyCGM2.Nexus.nexusTools) setTranslation() (pyCGM2.Model.frame.Frame method) setVersion() (pyCGM2.Model.CGM2.cgm.CGM1 method) setViewer() (pyCGM2.Report.plotFilters.PlottingFilter method) setYlimits() (pyCGM2.Report.plotFilters.PlottingFilter method) skewMatrix() (in module pyCGM2.Math.numeric) smartAppendAnalog() (in module pyCGM2.Tools.btkTools) smartAppendParamAnalysis() (in module pyCGM2.Tools.btkTools) smartAppendPoint() (in module pyCGM2.Tools.btkTools) smartCreateEvent() (in module pyCGM2.Tools.btkTools) smartGetEvents() (in module pyCGM2.Tools.btkTools) smartGetMetadata() (in module pyCGM2.Tools.btkTools) smartGetValues() (in module pyCGM2.Tools.opensimTools) smartReader() (in module pyCGM2.Tools.btkTools) smartSetMetadata() (in module pyCGM2.Tools.btkTools) smartWriter() (in module pyCGM2.Tools.btkTools) Sodervisk (pyCGM2.enums.motionMethod attribute) sortedEvents() (in module pyCGM2.Tools.btkTools) SpatioTemporalPlotViewer (class in pyCGM2.Report.Viewers.plotViewers) spatioTemporelParameter_descriptiveStats() (in module pyCGM2.Processing.cycle) splineDerivation() (in module pyCGM2.Math.derivation) splineFittingDerivation() (in module pyCGM2.Math.derivation) static (pyCGM2.Model.model.Referential attribute) StaticCalibrationProcedure (class in pyCGM2.Model.modelFilters) StaticOptimisationXmlCgmProcedure (class in pyCGM2.Model.Opensim.interface.procedures.staticOptimisation.opensimStaticOptimizationInterfaceProcedure) StaticOptimisationXmlProcedure (class in pyCGM2.Model.Opensim.interface.procedures.staticOptimisation.opensimStaticOptimizationInterfaceProcedure) sto2pointValues() (in module pyCGM2.Tools.opensimTools) stpHorizontalHistogram() (in module pyCGM2.Report.plot) stpInfo (pyCGM2.Processing.analysis.Analysis attribute) stpStats (pyCGM2.Processing.analysis.Analysis attribute) str() (in module pyCGM2.Utils.utils) subjectInfo (pyCGM2.Processing.analysis.Analysis attribute) SubjectMp() (in module pyCGM2.QTM.qtmTools) T TechnicalReferential (class in pyCGM2.Model.model) TemporalEmgPlotViewer (class in pyCGM2.Report.Viewers.emgPlotViewers) TemporalKinematicsPlotViewer (class in pyCGM2.Report.Viewers.plotViewers) TemporalKineticsPlotViewer (class in pyCGM2.Report.Viewers.plotViewers) temporalPlot() (in module pyCGM2.Report.plot) ThoraxProgressionFrameProcedure (class in pyCGM2.Processing.ProgressionFrame.progressionFrameProcedures) Threshold (pyCGM2.enums.EmgAmplitudeNormalization attribute) timeSequenceNormalisation() (in module pyCGM2.Math.normalisation) toBool() (in module pyCGM2.Utils.utils) transformMarker_ToOsimReferencial() (in module pyCGM2.Tools.opensimTools) Trial (pyCGM2.enums.EclipseType attribute) TrialEnfReader (class in pyCGM2.Nexus.eclipse) Trunk (pyCGM2.enums.BodyPartPlot attribute) try_as() (in module pyCGM2.Utils.files) U UniqueBtkAcqSetProcedure (class in pyCGM2.Processing.C3dManager.c3dManagerProcedures) UniqueC3dSetProcedure (class in pyCGM2.Processing.C3dManager.c3dManagerProcedures) unit (pyCGM2.Nexus.Devices.Channel attribute) UnithanCoActivationProcedure (class in pyCGM2.EMG.coactivationProcedures) Unknown (pyCGM2.enums.motionMethod attribute) update() (pyCGM2.IMU.imu.Imu method) (pyCGM2.Model.frame.Frame method) (pyCGM2.Model.Opensim.interface.opensimInterface.opensimXmlInterface method) updateAxisFromRotation() (pyCGM2.Model.frame.Frame method) updateFromcustomMp() (in module pyCGM2.Model.bodySegmentParameters) updateNexusSubjectMp() (in module pyCGM2.Nexus.nexusUtils) updateNode() (pyCGM2.Model.frame.Frame method) updateSegmentFromCopy() (pyCGM2.Model.model.Model method) UpperLimb (pyCGM2.enums.BodyPart attribute) (pyCGM2.enums.BodyPartPlot attribute) V values (pyCGM2.Nexus.Devices.Channel attribute) VCMJointCentre() (in module pyCGM2.Model.modelDecorator) version (pyCGM2.Model.CGM2.cgm2.CGM2_1 attribute) (pyCGM2.Model.CGM2.cgm2.CGM2_2 attribute) (pyCGM2.Model.CGM2.cgm2.CGM2_3 attribute) viconExport() (pyCGM2.Model.CGM2.cgm.CGM1 method) (pyCGM2.Model.CGM2.cgm2.CGM2_4 method) W WandAngleQualityProcedure (class in pyCGM2.Model.Procedures.modelQuality) wrapEulerTo() (in module pyCGM2.Math.euler) X XlsAnalysisExportFilter (class in pyCGM2.Processing.exporter) XlsExportDataFrameFilter (class in pyCGM2.Processing.exporter) XlsJointPatternProcedure (class in pyCGM2.Processing.JointPatterns.jointPatternProcedures) xml (pyCGM2.Model.Opensim.interface.opensimInterface.osimInterface attribute) Z zeni() (in module pyCGM2.Lib.eventDetector) ZeniProcedure (class in pyCGM2.Events.eventProcedures) zeroingExternalDevice() (pyCGM2.Model.model.Segment method) zeroingProximalWrench() (pyCGM2.Model.model.Segment method)
